JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MCCC2_chr5_71582340_71663706	0/0	c0009	1692	1	0	0	1	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	c0010	1692	1	0	1	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	c0011	1692	1	0	0	0	0	1	copy fasta	MCCC2	chr5	71582340	71663706
MCCD1_chr6_31523962_31535232	0/0	c0001	360	276	64	61	112	13	26	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/1	c0002	360	57	5	10	29	1	11	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/0	c0003	360	51	5	2	39	1	4	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/0	c0004	360	46	10	9	23	1	3	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/0	c0005	360	7	6	1	0	0	0	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/0	c0006	360	4	2	2	0	0	0	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/0	c0007	360	3	0	1	2	0	0	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/0	c0008	360	1	0	0	1	0	0	copy fasta	MCCD1	chr6	31523962	31535232
MCC_chr5_113017106_113493453	0/0	c0001	3063	21	0	2	15	3	1	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0002	3063	12	0	3	8	1	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0003	3060	8	1	2	4	0	1	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0004	3060	7	0	3	4	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/1	c0005	3060	6	0	1	2	0	2	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0006	3060	6	1	1	4	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0007	3060	6	5	0	1	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0008	3060	5	4	0	1	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0009	3060	5	5	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0010	3060	4	3	1	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0011	3060	4	2	1	1	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0012	3060	4	0	2	1	1	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0013	3063	4	2	2	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0014	3060	3	3	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0015	3060	3	3	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0016	3060	3	3	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0017	3060	3	2	0	1	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0018	3060	3	3	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0019	3072	3	0	1	1	0	1	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0020	3060	2	1	0	0	0	1	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0021	3060	2	1	1	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0022	3060	2	0	2	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0023	3060	2	2	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0024	3060	2	2	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0025	3060	2	2	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0026	3060	2	0	1	1	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0027	3060	2	1	1	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0028	3060	2	2	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0029	3063	2	0	1	1	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	1/0	c0030	3060	1	0	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0031	3060	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0032	3060	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0033	3060	1	0	1	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0034	3060	1	0	1	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0035	3060	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0036	3060	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0037	3060	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0038	3060	1	0	0	1	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0039	3060	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453