JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MCC_chr5_113017106_113493453	0/0	c0040	3060	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0041	3060	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0042	3060	1	0	0	1	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0043	3060	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0044	3060	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0045	3060	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0046	3060	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0047	3060	1	0	1	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0048	3060	1	0	1	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0049	3060	1	0	1	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0050	3060	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0051	3060	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0052	3060	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0053	3072	1	0	0	0	0	1	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0054	3072	1	0	0	1	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0055	3072	1	0	0	1	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0056	3063	1	0	0	0	0	1	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0057	3063	1	0	0	1	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0058	3060	1	1	0	0	0	0	copy fasta	MCC	chr5	113017106	113493453
MCC_chr5_113017106_113493453	0/0	c0059	3063	1	0	0	0	1	0	copy fasta	MCC	chr5	113017106	113493453
MCEE_chr2_71104687_71135229	1/0	c0001	531	270	68	46	124	6	25	copy fasta	MCEE	chr2	71104687	71135229
MCEE_chr2_71104687_71135229	0/0	c0002	531	84	23	14	40	2	5	copy fasta	MCEE	chr2	71104687	71135229
MCEE_chr2_71104687_71135229	0/1	c0003	531	41	2	14	12	4	8	copy fasta	MCEE	chr2	71104687	71135229
MCEE_chr2_71104687_71135229	0/0	c0004	531	10	5	1	3	0	1	copy fasta	MCEE	chr2	71104687	71135229
MCEE_chr2_71104687_71135229	0/0	c0005	531	4	0	0	0	0	4	copy fasta	MCEE	chr2	71104687	71135229
MCEE_chr2_71104687_71135229	0/0	c0006	531	3	0	0	0	0	3	copy fasta	MCEE	chr2	71104687	71135229
MCEE_chr2_71104687_71135229	0/0	c0007	531	2	0	0	2	0	0	copy fasta	MCEE	chr2	71104687	71135229
MCEE_chr2_71104687_71135229	0/0	c0008	531	2	0	2	0	0	0	copy fasta	MCEE	chr2	71104687	71135229
MCEE_chr2_71104687_71135229	0/0	c0009	531	1	0	0	1	0	0	copy fasta	MCEE	chr2	71104687	71135229
MCEE_chr2_71104687_71135229	0/0	c0010	531	1	0	1	0	0	0	copy fasta	MCEE	chr2	71104687	71135229
MCEMP1_chr19_7672090_7684829	1/1	c0001	525	390	77	76	178	14	43	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	c0002	525	39	11	5	18	2	3	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	c0003	525	10	9	1	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	c0004	525	3	0	1	0	2	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	c0005	525	1	0	0	1	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	c0006	525	1	1	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	c0007	525	1	1	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	c0008	525	1	1	0	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	c0009	525	1	0	1	0	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCEMP1_chr19_7672090_7684829	0/0	c0010	525	1	0	0	1	0	0	copy fasta	MCEMP1	chr19	7672090	7684829
MCF2L2_chr3_183173041_183433619	0/1	c0001	3345	49	8	16	15	1	8	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0002	3345	27	6	3	15	1	2	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0003	3345	17	3	6	7	0	1	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0004	3345	12	7	1	4	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0005	3345	7	6	1	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0006	3345	7	3	0	4	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0007	3345	7	2	1	4	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	1/0	c0008	3345	6	4	1	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0009	3345	4	2	2	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0010	3345	4	3	1	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619