JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MCF2L2_chr3_183173041_183433619	0/0	c0011	3345	3	0	2	0	0	1	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0012	3345	3	3	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0013	3345	3	2	1	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0014	3345	3	1	0	2	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0015	3345	2	2	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0016	3345	2	2	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0017	3345	2	2	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0018	3345	2	0	0	2	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0019	3345	1	0	0	0	0	1	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0020	3345	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0021	3345	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0022	3345	1	0	1	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0023	3345	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0024	3345	1	0	0	1	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0025	3345	1	0	0	1	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0026	3345	1	0	0	0	0	1	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0027	3345	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0028	3345	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0029	3345	1	0	0	0	0	1	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0030	3345	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0031	3345	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0032	3345	1	1	0	0	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0033	3345	1	0	0	0	0	1	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L2_chr3_183173041_183433619	0/0	c0034	3345	1	0	0	1	0	0	copy fasta	MCF2L2	chr3	183173041	183433619
MCF2L_chr13_112964214_113104742	1/1	c0001	3378	51	16	17	4	4	8	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	c0002	3378	12	3	6	0	0	3	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	c0003	3378	11	0	1	7	2	1	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	c0004	3378	10	2	3	1	2	2	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	c0005	3378	9	2	4	3	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	c0006	3378	5	1	2	1	0	1	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	c0007	3378	5	0	3	2	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	c0008	3378	3	3	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	c0009	3378	2	0	2	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	c0010	3378	1	1	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	c0011	3378	1	0	0	1	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	c0012	3378	1	1	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	c0013	3378	1	0	0	1	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	c0014	3378	1	1	0	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	c0015	3378	1	0	0	0	0	1	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	c0016	3378	1	0	1	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2L_chr13_112964214_113104742	0/0	c0017	3378	1	0	1	0	0	0	copy fasta	MCF2L	chr13	112964214	113104742
MCF2_chrX_139576770_139713167	1/0	c0001	3006	185	54	30	79	4	17	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/0	c0002	3006	29	10	4	15	0	0	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/1	c0003	3006	24	0	10	5	3	5	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/0	c0004	3006	3	3	0	0	0	0	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/0	c0005	3006	2	2	0	0	0	0	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/0	c0006	3006	2	0	0	2	0	0	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/0	c0007	3009	1	0	0	1	0	0	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/0	c0008	3006	1	1	0	0	0	0	copy fasta	MCF2	chrX	139576770	139713167
MCF2_chrX_139576770_139713167	0/0	c0009	3006	1	1	0	0	0	0	copy fasta	MCF2	chrX	139576770	139713167