JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MCF2_chrX_139576770_139713167	0/0	c0010	3006	1	1	0	0	0	0	copy fasta	MCF2	chrX	139576770	139713167
MCFD2_chr2_46896874_46920806	1/1	c0001	441	410	93	74	178	17	46	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	c0002	441	1	1	0	0	0	0	copy fasta	MCFD2	chr2	46896874	46920806
MCFD2_chr2_46896874_46920806	0/0	c0003	441	1	0	0	0	1	0	copy fasta	MCFD2	chr2	46896874	46920806
MCHR1_chr22_40674484_40687812	0/0	c0001	1062	268	42	39	154	14	19	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	1/1	c0002	1062	116	44	34	2	4	30	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	c0003	1062	8	7	1	0	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	c0004	1062	3	0	0	3	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	c0005	1062	3	0	0	3	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	c0006	1062	3	2	1	0	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	c0007	1062	1	0	1	0	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	c0008	1062	1	0	0	0	0	1	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	c0009	1062	1	1	0	0	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	c0010	1062	1	0	0	1	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR1_chr22_40674484_40687812	0/0	c0011	1062	1	0	0	1	0	0	copy fasta	MCHR1	chr22	40674484	40687812
MCHR2_chr6_99913519_99999223	1/1	c0001	1023	306	90	65	102	13	34	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	c0002	1023	6	1	2	0	1	2	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	c0003	1023	1	0	1	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	c0004	1023	1	0	0	1	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	c0005	1023	1	1	0	0	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCHR2_chr6_99913519_99999223	0/0	c0006	1023	1	0	0	1	0	0	copy fasta	MCHR2	chr6	99913519	99999223
MCIDAS_chr5_55214564_55232315	1/1	c0001	1158	216	64	29	96	5	20	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	c0002	1158	160	23	42	66	9	20	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	c0003	1158	2	0	0	0	0	2	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	c0004	1158	2	2	0	0	0	0	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	c0005	1158	2	0	0	2	0	0	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	c0006	1158	1	1	0	0	0	0	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	c0007	1158	1	0	0	1	0	0	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	c0008	1158	1	0	1	0	0	0	copy fasta	MCIDAS	chr5	55214564	55232315
MCIDAS_chr5_55214564_55232315	0/0	c0009	1158	1	0	0	1	0	0	copy fasta	MCIDAS	chr5	55214564	55232315
MCL1_chr1_150569558_150584610	1/1	c0001	1053	396	83	68	179	18	46	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	c0002	1053	11	11	0	0	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	c0003	1053	1	0	0	1	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	c0004	1053	1	1	0	0	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	c0005	1053	1	1	0	0	0	0	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	c0006	1053	1	0	0	0	0	1	copy fasta	MCL1	chr1	150569558	150584610
MCL1_chr1_150569558_150584610	0/0	c0007	1053	1	0	0	0	0	1	copy fasta	MCL1	chr1	150569558	150584610
MCM10_chr10_13156558_13216110	1/1	c0001	2625	241	62	38	109	7	23	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0002	2625	72	2	20	36	3	11	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0003	2625	38	1	7	18	6	6	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0004	2625	20	9	0	11	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0005	2625	9	0	8	0	0	1	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0006	2625	6	5	1	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0007	2625	5	0	2	0	1	2	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0008	2625	5	5	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0009	2625	4	0	0	4	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0010	2625	3	0	3	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0011	2625	2	2	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0012	2625	2	2	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0013	2625	2	0	0	0	0	2	copy fasta	MCM10	chr10	13156558	13216110