JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MCM10_chr10_13156558_13216110	0/0	c0014	2625	2	0	2	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0015	2625	2	0	0	0	1	1	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0016	2625	2	0	0	2	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0017	2625	2	0	0	2	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0018	2625	1	1	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0019	2625	1	1	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0020	2625	1	1	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0021	2625	1	1	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0022	2625	1	0	0	1	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0023	2625	1	0	0	0	0	1	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0024	2625	1	1	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0025	2625	1	0	1	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0026	2625	1	0	1	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0027	2625	1	1	0	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0028	2625	1	0	0	1	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0029	2625	1	0	0	1	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0030	2625	1	0	0	0	0	1	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0031	2625	1	0	1	0	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM10_chr10_13156558_13216110	0/0	c0032	2625	1	0	0	1	0	0	copy fasta	MCM10	chr10	13156558	13216110
MCM2_chr3_127593411_127627436	0/1	c0001	2715	173	42	41	56	10	23	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	1/0	c0002	2715	144	17	28	72	6	20	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0003	2715	43	1	1	41	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0004	2715	21	19	2	0	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0005	2715	11	7	4	0	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0006	2715	7	6	1	0	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0007	2715	4	0	0	4	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0008	2715	4	0	0	4	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0009	2715	3	0	0	2	0	1	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0010	2715	3	3	0	0	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0011	2715	1	0	0	0	0	1	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0012	2715	1	0	0	1	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0013	2715	1	0	0	1	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0014	2715	1	0	0	1	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0015	2715	1	1	0	0	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0016	2715	1	1	0	0	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0017	2715	1	0	0	1	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0018	2715	1	0	0	0	1	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0019	2715	1	0	0	1	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0020	2715	1	0	0	0	0	1	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0021	2715	1	0	1	0	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0022	2715	1	0	0	0	1	0	copy fasta	MCM2	chr3	127593411	127627436
MCM2_chr3_127593411_127627436	0/0	c0023	2715	1	1	0	0	0	0	copy fasta	MCM2	chr3	127593411	127627436
MCM3AP_chr21_46230133_46290611	1/0	c0001	5943	94	7	15	61	5	5	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0002	5943	72	10	18	29	4	11	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/1	c0003	5943	70	15	19	19	3	13	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0004	5943	22	21	1	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0005	5943	21	14	5	0	1	1	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0006	5943	12	8	2	0	2	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0007	5943	9	0	0	4	0	5	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0008	5943	4	3	1	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611