JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MCM3AP_chr21_46230133_46290611	0/0	c0009	5943	4	4	0	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0010	5943	4	0	0	4	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0011	5943	4	0	3	0	1	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0012	5943	4	0	0	4	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0013	5943	4	4	0	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0014	5943	3	0	0	3	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0015	5943	3	2	1	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0016	5943	2	0	2	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0017	5943	2	0	2	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0018	5943	2	0	0	2	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0019	5943	2	0	0	0	0	2	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0020	5943	1	0	0	1	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0021	5943	1	1	0	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0022	5943	1	0	1	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0023	5943	1	1	0	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0024	5943	1	0	0	1	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0025	5943	1	0	0	1	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0026	5943	1	1	0	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0027	5943	1	0	0	0	0	1	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0028	5943	1	0	0	1	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0029	5943	1	0	0	1	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0030	5943	1	0	0	0	0	1	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0031	5943	1	1	0	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0032	5943	1	1	0	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0033	5943	1	0	0	1	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0034	5943	1	0	0	1	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0035	5943	1	1	0	0	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0036	5943	1	0	0	1	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0037	5943	1	0	0	0	0	1	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0038	5943	1	0	0	1	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0039	5943	1	0	0	0	0	1	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0040	5943	1	0	0	1	0	0	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3AP_chr21_46230133_46290611	0/0	c0041	5943	1	0	0	0	0	1	copy fasta	MCM3AP	chr21	46230133	46290611
MCM3_chr6_52259015_52289742	1/0	c0001	2427	376	87	55	197	9	27	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/1	c0002	2427	23	0	10	0	1	11	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	c0003	2427	7	0	0	7	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	c0004	2427	4	3	1	0	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	c0005	2427	4	0	2	0	0	2	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	c0006	2427	3	0	0	3	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	c0007	2427	3	0	0	3	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	c0008	2427	2	0	0	0	2	0	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	c0009	2427	1	1	0	0	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	c0010	2427	1	0	0	1	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	c0011	2427	1	0	0	0	0	1	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	c0012	2427	1	0	1	0	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	c0013	2427	1	1	0	0	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	c0014	2427	1	0	0	1	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	c0015	2427	1	0	0	0	0	1	copy fasta	MCM3	chr6	52259015	52289742
MCM3_chr6_52259015_52289742	0/0	c0016	2427	1	0	1	0	0	0	copy fasta	MCM3	chr6	52259015	52289742
MCM4_chr8_47955941_47983160	0/1	c0001	2592	270	78	44	110	6	31	copy fasta	MCM4	chr8	47955941	47983160