JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD33_chr12_51883103_51896727	0/0	c0003	1359	43	1	12	28	0	2	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0004	1359	37	0	0	30	0	7	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0005	1359	22	9	7	0	1	5	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0006	1359	17	4	4	9	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0007	1359	9	0	0	9	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0008	1359	5	2	1	2	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0009	1365	4	0	4	0	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0010	1359	3	2	1	0	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0011	1359	3	0	0	3	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0012	1359	2	0	0	2	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0013	1359	2	0	0	1	0	1	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0014	1359	1	0	1	0	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0015	1359	1	0	0	0	1	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/1	c0016	1359	1	0	0	0	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0017	1359	1	0	0	1	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0018	1359	1	0	0	0	0	1	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0019	1359	1	1	0	0	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0020	1359	1	1	0	0	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0021	1359	1	1	0	0	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0022	1359	1	0	1	0	0	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD33_chr12_51883103_51896727	0/0	c0023	1347	1	0	0	0	1	0	copy fasta	ANKRD33	chr12	51883103	51896727
ANKRD34A_chr1_145954441_145969575	1/1	c0001	1491	383	89	75	165	10	42	copy fasta	ANKRD34A	chr1	145954441	145969575
ANKRD34A_chr1_145954441_145969575	0/0	c0002	1491	5	0	0	5	0	0	copy fasta	ANKRD34A	chr1	145954441	145969575
ANKRD34A_chr1_145954441_145969575	0/0	c0003	1491	1	0	1	0	0	0	copy fasta	ANKRD34A	chr1	145954441	145969575
ANKRD34A_chr1_145954441_145969575	0/0	c0004	1491	1	1	0	0	0	0	copy fasta	ANKRD34A	chr1	145954441	145969575
ANKRD34B_chr5_80551755_80575280	0/1	c0001	1545	353	84	62	154	11	41	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34B_chr5_80551755_80575280	1/0	c0002	1545	21	2	8	0	5	5	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34B_chr5_80551755_80575280	0/0	c0003	1545	5	4	1	0	0	0	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34B_chr5_80551755_80575280	0/0	c0004	1545	4	0	2	0	2	0	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34B_chr5_80551755_80575280	0/0	c0005	1545	3	0	0	3	0	0	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34B_chr5_80551755_80575280	0/0	c0006	1545	1	0	1	0	0	0	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34B_chr5_80551755_80575280	0/0	c0007	1545	1	0	1	0	0	0	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34B_chr5_80551755_80575280	0/0	c0008	1545	1	0	1	0	0	0	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34B_chr5_80551755_80575280	0/0	c0009	1545	1	1	0	0	0	0	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34B_chr5_80551755_80575280	0/0	c0010	1545	1	1	0	0	0	0	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34B_chr5_80551755_80575280	0/0	c0011	1545	1	0	0	1	0	0	copy fasta	ANKRD34B	chr5	80551755	80575280
ANKRD34C_chr15_79277722_79303239	0/1	c0001	1608	270	55	53	123	14	24	copy fasta	ANKRD34C	chr15	79277722	79303239
ANKRD34C_chr15_79277722_79303239	1/0	c0002	1608	138	26	30	59	1	21	copy fasta	ANKRD34C	chr15	79277722	79303239
ANKRD34C_chr15_79277722_79303239	0/0	c0003	1608	10	10	0	0	0	0	copy fasta	ANKRD34C	chr15	79277722	79303239
ANKRD34C_chr15_79277722_79303239	0/0	c0004	1608	6	0	1	5	0	0	copy fasta	ANKRD34C	chr15	79277722	79303239
ANKRD34C_chr15_79277722_79303239	0/0	c0005	1608	1	1	0	0	0	0	copy fasta	ANKRD34C	chr15	79277722	79303239
ANKRD34C_chr15_79277722_79303239	0/0	c0006	1608	1	0	0	1	0	0	copy fasta	ANKRD34C	chr15	79277722	79303239
ANKRD34C_chr15_79277722_79303239	0/0	c0007	1608	1	0	0	1	0	0	copy fasta	ANKRD34C	chr15	79277722	79303239
ANKRD34C_chr15_79277722_79303239	0/0	c0008	1608	1	0	0	1	0	0	copy fasta	ANKRD34C	chr15	79277722	79303239
ANKRD34C_chr15_79277722_79303239	0/0	c0009	1608	1	0	0	0	1	0	copy fasta	ANKRD34C	chr15	79277722	79303239
ANKRD34C_chr15_79277722_79303239	0/0	c0010	1608	1	0	0	0	0	1	copy fasta	ANKRD34C	chr15	79277722	79303239
ANKRD35_chr1_145861564_145890866	0/1	c0001	3006	210	42	36	105	4	22	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	1/0	c0002	3006	52	1	7	32	1	10	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0003	3006	45	7	15	12	7	4	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0004	3006	16	15	1	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866