JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MCM4_chr8_47955941_47983160	1/0	c0002	2592	22	3	7	0	6	5	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	c0003	2592	4	2	0	0	0	2	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	c0004	2592	3	0	0	3	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	c0005	2592	3	3	0	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	c0006	2592	3	3	0	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	c0007	2592	2	0	0	2	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	c0008	2592	1	1	0	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	c0009	2592	1	0	0	0	0	1	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	c0010	2592	1	0	0	0	0	1	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	c0011	2592	1	1	0	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	c0012	2592	1	0	1	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	c0013	2592	1	0	0	1	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM4_chr8_47955941_47983160	0/0	c0014	2592	1	1	0	0	0	0	copy fasta	MCM4	chr8	47955941	47983160
MCM5_chr22_35395140_35430431	1/0	c0001	2205	345	61	70	160	13	40	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/1	c0002	2205	31	12	3	10	1	4	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0003	2205	9	3	3	2	0	1	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0004	2205	2	0	0	0	2	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0005	2205	1	1	0	0	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0006	2205	1	0	0	1	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0007	2205	1	0	0	1	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0008	2205	1	0	0	1	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0009	2205	1	0	0	1	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0010	2205	1	0	1	0	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0011	2205	1	0	1	0	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0012	2205	1	0	0	0	1	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0013	2205	1	0	0	0	0	1	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0014	2205	1	0	0	1	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0015	2205	1	1	0	0	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0016	2205	1	0	0	1	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0017	2205	1	0	1	0	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0018	2205	1	0	0	1	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0019	2205	1	0	1	0	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0020	2205	1	0	0	0	1	0	copy fasta	MCM5	chr22	35395140	35430431
MCM5_chr22_35395140_35430431	0/0	c0021	2205	1	0	0	1	0	0	copy fasta	MCM5	chr22	35395140	35430431
MCM6_chr2_135834626_135881443	1/1	c0001	2466	331	56	69	159	7	38	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	c0002	2466	27	27	0	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	c0003	2466	23	0	2	21	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	c0004	2466	1	0	1	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	c0005	2466	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	c0006	2466	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	c0007	2466	1	1	0	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	c0008	2466	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	c0009	2466	1	1	0	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	c0010	2466	1	0	1	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	c0011	2466	1	1	0	0	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	c0012	2466	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	c0013	2466	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	c0014	2466	1	0	0	1	0	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	c0015	2466	1	0	0	0	1	0	copy fasta	MCM6	chr2	135834626	135881443
MCM6_chr2_135834626_135881443	0/0	c0016	2466	1	0	1	0	0	0	copy fasta	MCM6	chr2	135834626	135881443