JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MCM7_chr7_100087728_100106397	1/1	c0001	2160	163	59	34	43	10	15	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0002	2160	115	6	14	74	4	17	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0003	2160	83	4	18	49	3	9	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0004	2160	20	2	4	8	1	5	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0005	2160	10	10	0	0	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0006	2160	5	5	0	0	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0007	2160	4	0	0	4	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0008	2160	3	0	0	0	0	3	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0009	2160	2	0	2	0	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0010	2160	2	2	0	0	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0011	2160	2	2	0	0	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0012	2160	2	0	0	2	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0013	2160	2	0	2	0	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0014	2160	1	1	0	0	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0015	2160	1	1	0	0	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0016	2160	1	1	0	0	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0017	2160	1	0	0	1	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0018	2160	1	0	0	0	0	1	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0019	2160	1	0	0	1	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0020	2160	1	0	0	1	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0021	2160	1	0	0	1	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM7_chr7_100087728_100106397	0/0	c0022	2160	1	1	0	0	0	0	copy fasta	MCM7	chr7	100087728	100106397
MCM8_chr20_5945652_6003977	1/0	c0001	2523	161	27	33	78	9	13	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0002	2523	92	39	10	27	3	13	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0003	2523	43	1	0	40	0	2	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0004	2523	21	11	8	0	1	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0005	2523	8	0	6	0	1	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0006	2523	4	1	2	0	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0007	2523	4	0	0	4	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0008	2523	4	0	3	0	1	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0009	2523	3	3	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0010	2523	3	3	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0011	2523	3	3	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/1	c0012	2523	3	0	1	0	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0013	2523	3	3	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0014	2523	2	0	0	0	0	2	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0015	2523	2	0	0	2	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0016	2523	2	0	0	0	0	2	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0017	2523	1	0	0	0	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0018	2523	1	0	0	0	1	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0019	2523	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0020	2523	1	0	0	1	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0021	2523	1	0	1	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0022	2523	1	0	0	0	0	1	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0023	2523	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM8_chr20_5945652_6003977	0/0	c0024	2523	1	1	0	0	0	0	copy fasta	MCM8	chr20	5945652	6003977
MCM9_chr6_118808455_118940159	0/1	c0001	3432	212	59	41	75	14	22	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0002	3432	51	9	4	36	0	2	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0003	3432	28	3	8	8	3	6	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0004	3432	13	0	4	9	0	0	copy fasta	MCM9	chr6	118808455	118940159