JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MCM9_chr6_118808455_118940159	0/0	c0005	3432	7	6	1	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0006	3432	7	0	5	0	1	1	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0007	3432	6	0	2	2	0	2	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0008	3432	3	2	1	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0009	3432	2	0	2	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0010	3432	2	2	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0011	3432	2	2	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0012	3432	1	0	0	1	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0013	3432	1	0	0	1	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0014	3432	1	0	0	1	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0015	3432	1	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0016	3432	1	0	0	1	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0017	3432	1	0	0	1	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0018	3432	1	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0019	3432	1	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0020	3432	1	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0021	3432	1	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0022	3432	1	0	0	0	0	1	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0023	3432	1	0	0	1	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	1/0	c0024	3432	1	0	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0025	3432	1	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCM9_chr6_118808455_118940159	0/0	c0026	3432	1	1	0	0	0	0	copy fasta	MCM9	chr6	118808455	118940159
MCMBP_chr10_119824440_119877843	1/1	c0001	1923	346	70	63	165	14	32	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	c0002	1923	27	6	10	0	2	9	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	c0003	1923	7	7	0	0	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	c0004	1923	7	5	2	0	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	c0005	1923	5	5	0	0	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	c0006	1923	2	2	0	0	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	c0007	1923	1	0	0	1	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	c0008	1923	1	0	0	1	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	c0009	1923	1	0	0	1	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	c0010	1923	1	0	1	0	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	c0011	1923	1	1	0	0	0	0	copy fasta	MCMBP	chr10	119824440	119877843
MCMBP_chr10_119824440_119877843	0/0	c0012	1923	1	0	0	0	0	1	copy fasta	MCMBP	chr10	119824440	119877843
MCMDC2_chr8_66865771_66927048	1/1	c0001	2046	147	44	30	46	7	18	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	c0002	2046	10	0	5	1	0	4	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	c0003	2046	10	10	0	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	c0004	2046	9	7	2	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	c0005	2046	7	6	1	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	c0006	2046	7	0	4	0	3	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	c0007	2046	2	2	0	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	c0008	2046	2	2	0	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	c0009	2046	2	2	0	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	c0010	2046	1	0	1	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	c0011	2046	1	1	0	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	c0012	2046	1	0	0	1	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	c0013	2046	1	0	0	0	0	1	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	c0014	2046	1	0	1	0	0	0	copy fasta	MCMDC2	chr8	66865771	66927048
MCMDC2_chr8_66865771_66927048	0/0	c0015	2046	1	0	0	0	0	1	copy fasta	MCMDC2	chr8	66865771	66927048
MCOLN1_chr19_7517624_7539009	1/1	c0001	1743	291	59	46	146	9	29	copy fasta	MCOLN1	chr19	7517624	7539009