JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MCOLN1_chr19_7517624_7539009	0/0	c0002	1743	94	25	25	24	7	13	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	c0003	1743	12	1	9	0	2	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	c0004	1743	3	2	1	0	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	c0005	1743	2	0	0	2	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	c0006	1743	1	1	0	0	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	c0007	1743	1	1	0	0	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	c0008	1743	1	1	0	0	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	c0009	1743	1	0	0	0	0	1	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	c0010	1743	1	1	0	0	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	c0011	1743	1	1	0	0	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	c0012	1743	1	0	0	1	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	c0013	1743	1	0	0	0	0	1	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	c0014	1743	1	0	1	0	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	c0015	1743	1	1	0	0	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	c0016	1743	1	0	0	1	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN1_chr19_7517624_7539009	0/0	c0017	1743	1	1	0	0	0	0	copy fasta	MCOLN1	chr19	7517624	7539009
MCOLN2_chr1_84920583_85002113	1/1	c0001	1701	315	56	63	149	12	33	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	c0002	1701	10	8	2	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	c0003	1701	9	9	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	c0004	1701	4	4	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	c0005	1701	3	3	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	c0006	1701	3	1	2	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	c0007	1701	1	1	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	c0008	1701	1	0	0	0	0	1	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	c0009	1701	1	1	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	c0010	1701	1	0	1	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	c0011	1701	1	0	0	1	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	c0012	1701	1	1	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN3_chr1_85013082_85053500	0/1	c0001	1662	268	60	43	127	11	26	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	1/0	c0002	1662	93	17	22	42	5	6	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	c0003	1662	3	0	0	3	0	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	c0004	1662	1	0	0	1	0	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	c0005	1662	1	1	0	0	0	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	c0006	1662	1	0	0	1	0	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	c0007	1662	1	1	0	0	0	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	c0008	1662	1	0	1	0	0	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	c0009	1662	1	1	0	0	0	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCPH1_chr8_6401627_6653508	0/1	c0001	2508	37	4	7	18	2	5	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0002	2508	26	1	1	21	1	2	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0003	2508	16	0	4	11	0	1	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0004	2508	12	0	0	9	0	3	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0005	2508	10	1	1	2	0	6	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0006	2508	9	0	0	9	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0007	2508	9	1	3	1	3	1	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0008	2508	9	0	0	8	0	1	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0009	2508	5	5	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0010	2508	4	0	0	4	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0011	2508	4	1	2	0	0	1	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0012	2508	4	2	2	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0013	2508	4	0	0	0	0	4	copy fasta	MCPH1	chr8	6401627	6653508