JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MCPH1_chr8_6401627_6653508	0/0	c0064	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0065	2508	1	0	0	0	0	1	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0066	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0067	2508	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0068	2508	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0069	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0070	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0071	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0072	2508	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0073	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0074	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0075	2508	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0076	2508	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0077	2508	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0078	2508	1	0	1	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0079	2508	1	0	1	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0080	2508	1	0	0	0	1	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0081	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0082	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0083	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0084	2508	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0085	2508	1	0	0	0	0	1	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0086	2508	1	0	0	0	0	1	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0087	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0088	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0089	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0090	2508	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0091	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0092	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0093	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0094	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0095	2508	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0096	2508	1	0	1	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0097	2508	1	0	0	0	1	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	c0098	2508	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCRIP1_chr17_81817361_81838291	1/1	c0001	294	364	89	80	136	16	41	copy fasta	MCRIP1	chr17	81817361	81838291
MCRIP1_chr17_81817361_81838291	0/0	c0002	294	1	1	0	0	0	0	copy fasta	MCRIP1	chr17	81817361	81838291
MCRIP1_chr17_81817361_81838291	0/0	c0003	294	1	0	0	0	0	1	copy fasta	MCRIP1	chr17	81817361	81838291
MCRIP2_chr16_636828_653474	1/1	c0001	483	418	98	78	178	16	46	copy fasta	MCRIP2	chr16	636828	653474
MCRIP2_chr16_636828_653474	0/0	c0002	483	1	0	0	1	0	0	copy fasta	MCRIP2	chr16	636828	653474
MCRIP2_chr16_636828_653474	0/0	c0003	483	1	0	0	1	0	0	copy fasta	MCRIP2	chr16	636828	653474
MCRS1_chr12_49553299_49573142	1/1	c0001	1389	248	66	50	82	12	36	copy fasta	MCRS1	chr12	49553299	49573142
MCRS1_chr12_49553299_49573142	0/0	c0002	1389	52	21	10	15	2	4	copy fasta	MCRS1	chr12	49553299	49573142
MCRS1_chr12_49553299_49573142	0/0	c0003	1389	4	0	0	4	0	0	copy fasta	MCRS1	chr12	49553299	49573142
MCRS1_chr12_49553299_49573142	0/0	c0004	1389	2	0	2	0	0	0	copy fasta	MCRS1	chr12	49553299	49573142
MCRS1_chr12_49553299_49573142	0/0	c0005	1389	1	0	0	1	0	0	copy fasta	MCRS1	chr12	49553299	49573142
MCRS1_chr12_49553299_49573142	0/0	c0006	1389	1	1	0	0	0	0	copy fasta	MCRS1	chr12	49553299	49573142
MCTP1_chr5_94698690_95290094	0/0	c0001	3000	28	19	0	6	2	1	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	c0002	3000	20	6	4	6	0	4	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	c0003	3000	16	4	3	8	0	1	copy fasta	MCTP1	chr5	94698690	95290094