JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MCTP1_chr5_94698690_95290094	0/0	c0004	3000	10	0	1	6	2	1	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	c0005	3000	5	2	1	1	0	1	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	c0006	3000	5	4	1	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	c0007	3000	2	1	0	1	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	c0008	3000	2	2	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	c0009	3000	2	1	1	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	c0010	3000	2	2	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	c0011	3000	1	0	1	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	c0012	3000	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	c0013	3000	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	c0014	3000	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	c0015	3000	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	c0016	3000	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP2_chr15_94226561_94488952	0/0	c0001	2637	100	32	23	24	8	13	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	1/1	c0002	2637	85	25	13	38	2	5	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0003	2637	25	4	8	6	2	5	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0004	2637	19	1	2	14	0	2	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0005	2637	6	1	0	2	0	3	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0006	2637	5	3	0	1	0	1	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0007	2637	3	2	0	1	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0008	2637	3	3	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0009	2637	3	3	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0010	2637	3	1	2	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0011	2637	2	2	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0012	2637	2	0	0	1	0	1	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0013	2637	2	2	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0014	2637	2	1	1	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0015	2637	2	0	0	2	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0016	2637	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0017	2637	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0018	2637	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0019	2637	1	0	0	0	0	1	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0020	2637	1	0	0	1	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0021	2637	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0022	2637	1	0	0	1	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0023	2637	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0024	2637	1	0	1	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0025	2637	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0026	2637	1	0	0	1	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0027	2637	1	0	0	0	0	1	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0028	2637	1	0	0	1	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	c0029	2637	1	0	0	1	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTS1_chrX_120599101_120626159	1/1	c0001	546	315	76	48	154	9	26	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	c0002	548	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS2_chr20_31542379_31553081	1/1	c0001	546	349	90	76	131	14	36	copy fasta	MCTS2	chr20	31542379	31553081
MCTS2_chr20_31542379_31553081	0/0	c0002	532	1	0	0	1	0	0	copy fasta	MCTS2	chr20	31542379	31553081
MCUB_chr4_109555246_109693719	0/0	c0001	1011	140	52	17	49	7	15	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	c0002	1011	86	11	22	46	2	5	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/1	c0003	1011	75	7	17	32	3	15	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	c0004	1011	16	14	2	0	0	0	copy fasta	MCUB	chr4	109555246	109693719