JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MCUB_chr4_109555246_109693719	1/0	c0005	1011	7	4	1	0	0	1	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	c0006	1011	4	0	0	4	0	0	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	c0007	1011	3	0	0	3	0	0	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	c0008	1011	1	0	0	1	0	0	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	c0009	1011	1	1	0	0	0	0	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	c0010	1011	1	0	0	1	0	0	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	c0011	1011	1	1	0	0	0	0	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	c0012	1011	1	0	1	0	0	0	copy fasta	MCUB	chr4	109555246	109693719
MCUR1_chr6_13781557_13819557	0/1	c0001	1080	164	54	38	46	8	17	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	1/0	c0002	1080	126	21	15	70	8	11	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	c0003	1080	49	1	5	38	2	3	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	c0004	1080	45	1	0	42	0	2	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	c0005	1080	22	12	9	0	0	1	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	c0006	1080	7	7	0	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	c0007	1080	6	0	4	0	0	2	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	c0008	1080	2	0	0	2	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	c0009	1080	1	0	0	1	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	c0010	1080	1	0	0	1	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	c0011	1080	1	0	1	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCU_chr10_72687143_72892694	1/1	c0001	1056	191	67	44	48	8	22	copy fasta	MCU	chr10	72687143	72892694
MCU_chr10_72687143_72892694	0/0	c0002	1056	15	14	1	0	0	0	copy fasta	MCU	chr10	72687143	72892694
MCU_chr10_72687143_72892694	0/0	c0003	1056	2	1	1	0	0	0	copy fasta	MCU	chr10	72687143	72892694
MCU_chr10_72687143_72892694	0/0	c0004	1056	1	1	0	0	0	0	copy fasta	MCU	chr10	72687143	72892694
MCU_chr10_72687143_72892694	0/0	c0005	1056	1	1	0	0	0	0	copy fasta	MCU	chr10	72687143	72892694
MDC1_chr6_30694807_30722281	0/0	c0001	6270	232	49	46	108	8	21	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0002	6270	29	0	9	8	4	8	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0003	6270	24	2	6	12	1	3	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0004	6270	20	0	0	19	0	1	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0005	6270	12	0	0	12	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/1	c0006	6270	11	0	0	5	1	4	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0007	6270	11	10	0	0	0	1	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0008	6393	10	5	1	1	0	3	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0009	6270	6	4	2	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0010	6270	5	0	4	0	1	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0011	6270	4	3	1	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0012	6270	4	0	1	0	0	3	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0013	6270	4	2	2	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0014	6270	3	0	0	3	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0015	6270	3	0	0	3	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0016	6270	3	2	1	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0017	6270	2	2	0	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0018	6393	2	0	2	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0019	6270	2	0	0	2	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0020	6270	2	2	0	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0021	6270	2	1	0	0	1	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0022	6270	2	0	0	0	2	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0023	6270	2	2	0	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0024	6270	2	0	0	2	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0025	6270	2	2	0	0	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	c0026	6270	1	0	0	1	0	0	copy fasta	MDC1	chr6	30694807	30722281