JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MDGA1_chr6_37625679_37702883	0/0	c0016	2868	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0017	2868	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0018	2868	1	0	1	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0019	2868	1	0	1	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0020	2868	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0021	2868	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0022	2868	1	0	0	0	0	1	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0023	2868	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0024	2868	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0025	2868	1	0	0	0	1	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0026	2868	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0027	2868	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	c0028	2868	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA2_chr14_46835092_47680605	0/0	c0001	3078	91	33	29	5	5	19	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	c0002	3078	16	14	2	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	c0003	3078	3	0	0	2	1	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	c0004	3078	3	3	0	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	c0005	3078	2	0	1	1	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	c0006	3078	1	0	0	0	0	1	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	c0007	3078	1	1	0	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	c0008	3078	1	0	1	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	c0009	3078	1	0	1	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	c0010	3078	1	1	0	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDH1B_chr2_206732763_206770328	1/1	c0001	1557	188	39	46	69	10	22	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	c0002	1557	88	20	11	51	1	5	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	c0003	1557	34	12	1	16	0	5	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	c0004	1557	23	1	2	18	0	2	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	c0005	1557	11	9	0	1	0	1	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	c0006	1557	9	9	0	0	0	0	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	c0007	1557	6	0	1	0	1	4	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	c0008	1557	3	2	1	0	0	0	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	c0009	1557	2	0	0	2	0	0	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	c0010	1557	2	0	0	0	0	2	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	c0011	1557	1	0	0	1	0	0	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	c0012	1557	1	1	0	0	0	0	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	c0013	1557	1	0	0	0	0	1	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	c0014	1557	1	1	0	0	0	0	copy fasta	MDH1B	chr2	206732763	206770328
MDH1_chr2_63583963_63612197	1/1	c0001	1005	336	79	63	130	16	46	copy fasta	MDH1	chr2	63583963	63612197
MDH1_chr2_63583963_63612197	0/0	c0002	1005	16	15	1	0	0	0	copy fasta	MDH1	chr2	63583963	63612197
MDH1_chr2_63583963_63612197	0/0	c0003	1005	1	1	0	0	0	0	copy fasta	MDH1	chr2	63583963	63612197
MDH1_chr2_63583963_63612197	0/0	c0004	1005	1	1	0	0	0	0	copy fasta	MDH1	chr2	63583963	63612197
MDH2_chr7_76043106_76072508	0/0	c0001	1017	229	57	26	115	6	25	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	1/1	c0002	1017	147	19	35	61	10	20	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	c0003	1017	9	1	7	0	1	0	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	c0004	1017	4	3	1	0	0	0	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	c0005	1017	2	2	0	0	0	0	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	c0006	1017	2	2	0	0	0	0	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	c0007	1017	1	0	0	0	1	0	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	c0008	1017	1	0	1	0	0	0	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	c0009	1017	1	0	0	0	0	1	copy fasta	MDH2	chr7	76043106	76072508