JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD35_chr1_145861564_145890866	0/0	c0005	3006	11	0	5	0	5	1	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0006	3006	7	7	0	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0007	3006	7	0	0	7	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0008	3006	6	1	4	0	1	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0009	3006	5	5	0	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0010	3006	4	3	1	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0011	3006	4	4	0	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0012	3006	3	0	0	3	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0013	3006	3	0	0	0	0	3	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0014	3006	3	2	1	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0015	3006	2	2	0	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0016	3006	2	2	0	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0017	3006	2	0	0	2	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0018	3006	2	0	0	2	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0019	3006	2	2	0	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0020	3006	1	0	0	1	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0021	3006	1	0	0	1	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0022	3006	1	0	0	0	0	1	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0023	3006	1	1	0	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0024	3006	1	0	1	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0025	3006	1	0	0	1	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0026	3006	1	0	1	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0027	3006	1	0	0	0	0	1	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0028	3006	1	1	0	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0029	3006	1	0	0	1	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0030	3006	1	0	0	1	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0031	3006	1	0	0	1	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0032	3006	1	1	0	0	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD35_chr1_145861564_145890866	0/0	c0033	3006	1	0	0	1	0	0	copy fasta	ANKRD35	chr1	145861564	145890866
ANKRD36C_chr2_95844548_95996824	0/0	c0001	6360	38	0	7	19	2	10	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0002	6360	36	7	6	17	1	5	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0003	6258	31	0	11	16	0	4	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0004	6258	29	4	7	14	3	1	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0005	6360	25	15	3	6	0	1	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0006	6360	20	3	4	13	0	0	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0007	6258	15	0	0	15	0	0	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0008	6258	8	8	0	0	0	0	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0009	6360	6	6	0	0	0	0	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0010	6360	5	3	0	2	0	0	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0011	6360	5	1	1	2	0	1	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0012	6258	4	0	2	2	0	0	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0013	6258	4	1	3	0	0	0	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0014	6258	3	0	2	0	0	1	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0015	6360	3	0	0	1	0	2	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0016	6054	3	0	0	3	0	0	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0017	6360	2	0	0	0	0	2	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0018	6360	2	0	2	0	0	0	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0019	6156	2	0	0	0	0	2	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0020	6258	2	0	2	0	0	0	copy fasta	ANKRD36C	chr2	95844548	95996824
ANKRD36C_chr2_95844548_95996824	0/0	c0021	6258	2	0	0	2	0	0	copy fasta	ANKRD36C	chr2	95844548	95996824