JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
MDN1_chr6_89637498_89824794	0/0	c0010	16791	9	0	2	4	3	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0011	16791	7	0	0	7	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0012	16791	5	5	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0013	16791	3	3	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0014	16791	3	0	0	3	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0015	16791	3	3	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0016	16791	3	3	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0017	16791	2	0	0	0	2	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0018	16791	2	2	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0019	16791	2	2	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0020	16791	2	0	1	1	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0021	16791	2	2	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0022	16791	2	0	2	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0023	16791	1	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0024	16791	1	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0025	16791	1	0	0	1	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0026	16791	1	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0027	16791	1	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0028	16791	1	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0029	16791	1	0	0	0	1	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0030	16791	1	0	0	1	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0031	16791	1	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0032	16791	1	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0033	16791	1	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0034	16791	1	0	0	0	1	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0035	16791	1	0	1	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0036	16791	1	0	0	0	1	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0037	16791	1	0	0	0	1	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	1/0	c0038	16791	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0039	16791	1	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0040	16791	1	0	1	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0041	16791	1	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0042	16791	1	0	0	1	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0043	16791	1	0	0	1	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0044	16791	1	0	0	1	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0045	16791	1	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0046	16791	1	0	0	1	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0047	16791	1	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0048	16791	1	0	0	1	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0049	16791	1	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0050	16791	1	0	0	1	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0051	16791	1	0	0	1	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0052	16791	1	0	0	1	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0053	16791	1	0	1	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0054	16791	1	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0055	16791	1	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0056	16791	1	0	1	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0057	16791	1	0	1	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0058	16791	1	0	0	1	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0059	16791	1	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794