JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MDN1_chr6_89637498_89824794	0/0	c0060	16791	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0061	16791	1	0	0	0	0	1	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0062	16791	1	0	0	0	0	1	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0063	16791	1	0	0	1	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0064	16791	1	0	0	0	0	1	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0065	16791	1	0	0	1	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	c0066	16791	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDP1_chr14_24208943_24221066	1/0	c0001	531	307	50	58	146	13	39	copy fasta	MDP1	chr14	24208943	24221066
MDP1_chr14_24208943_24221066	0/1	c0002	530	93	38	8	38	3	5	copy fasta	MDP1	chr14	24208943	24221066
MDP1_chr14_24208943_24221066	0/0	c0003	531	2	0	2	0	0	0	copy fasta	MDP1	chr14	24208943	24221066
MDP1_chr14_24208943_24221066	0/0	c0004	530	1	0	0	1	0	0	copy fasta	MDP1	chr14	24208943	24221066
MDP1_chr14_24208943_24221066	0/0	c0005	530	1	0	0	1	0	0	copy fasta	MDP1	chr14	24208943	24221066
ME1_chr6_83205402_83436051	0/0	c0001	1719	119	19	25	56	10	9	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	1/1	c0002	1719	117	24	24	51	5	11	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	c0003	1719	18	18	0	0	0	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	c0004	1719	7	0	1	6	0	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	c0005	1719	3	2	1	0	0	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	c0006	1719	1	0	1	0	0	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	c0007	1719	1	0	0	0	0	1	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	c0008	1719	1	1	0	0	0	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	c0009	1719	1	0	0	0	1	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	c0010	1719	1	0	0	0	0	1	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	c0011	1719	1	1	0	0	0	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	c0012	1719	1	1	0	0	0	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	c0013	1719	1	0	0	1	0	0	copy fasta	ME1	chr6	83205402	83436051
ME2_chr18_50874118_50959257	1/1	c0001	1755	248	60	51	106	9	20	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	c0002	1755	71	29	9	27	1	5	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	c0003	1755	10	0	1	9	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	c0004	1755	3	0	0	3	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	c0005	1755	2	0	0	1	0	1	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	c0006	1755	2	0	0	2	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	c0007	1755	2	0	2	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	c0008	1755	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	c0009	1755	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	c0010	1755	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	c0011	1755	1	0	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME3_chr11_86436108_86677616	1/0	c0001	1815	107	38	9	43	5	11	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0002	1815	80	13	17	42	2	6	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0003	1815	25	2	13	2	1	7	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0004	1815	20	9	5	0	0	6	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0005	1815	16	0	2	13	0	1	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0006	1815	13	4	2	4	0	3	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0007	1815	12	7	2	2	0	1	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/1	c0008	1815	12	2	1	8	0	0	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0009	1815	6	0	5	0	1	0	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0010	1815	5	1	0	0	0	4	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0011	1815	5	0	3	0	1	1	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0012	1815	5	1	2	0	0	2	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0013	1815	3	0	0	3	0	0	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0014	1815	2	0	2	0	0	0	copy fasta	ME3	chr11	86436108	86677616