JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ME3_chr11_86436108_86677616	0/0	c0015	1815	2	0	0	2	0	0	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0016	1814	1	0	0	1	0	0	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0017	1815	1	0	0	1	0	0	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0018	1815	1	1	0	0	0	0	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0019	1815	1	1	0	0	0	0	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0020	1815	1	1	0	0	0	0	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0021	1815	1	0	0	1	0	0	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	c0022	1815	1	0	1	0	0	0	copy fasta	ME3	chr11	86436108	86677616
MEA1_chr6_43006143_43018946	1/1	c0001	558	326	94	71	125	6	28	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	c0002	558	2	0	0	2	0	0	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	c0003	558	2	0	2	0	0	0	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	c0004	558	1	0	0	1	0	0	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	c0005	558	1	0	1	0	0	0	copy fasta	MEA1	chr6	43006143	43018946
MEAF6_chr1_37484993_37519766	1/1	c0001	576	422	88	76	198	16	42	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	c0002	576	6	4	2	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAK7_chr16_84471355_84509659	0/1	c0001	1371	199	17	45	106	3	27	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0002	1371	90	2	6	69	3	10	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0003	1371	70	12	16	26	6	10	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0004	1371	18	15	3	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0005	1371	15	4	0	9	2	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0006	1371	7	7	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0007	1371	6	0	1	5	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0008	1371	6	5	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0009	1371	5	4	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0010	1371	5	5	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0011	1371	5	5	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0012	1371	4	4	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0013	1371	4	4	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0014	1371	3	0	3	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0015	1371	2	0	0	2	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0016	1371	2	1	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0017	1371	2	0	0	2	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0018	1371	2	0	1	0	1	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0019	1371	2	2	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0020	1371	2	2	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	1/0	c0021	1371	1	0	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0022	1371	1	0	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0023	1371	1	0	0	0	1	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0024	1371	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0025	1371	1	0	0	0	1	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0026	1371	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0027	1371	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0028	1371	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0029	1371	1	0	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0030	1371	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0031	1371	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0032	1371	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0033	1371	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0034	1371	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0035	1371	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659