JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MEAK7_chr16_84471355_84509659	0/0	c0036	1371	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0037	1371	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0038	1371	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	c0039	1371	1	0	0	0	1	0	copy fasta	MEAK7	chr16	84471355	84509659
MECOM_chr3_169078507_169668712	0/0	c0001	3720	98	48	8	34	1	7	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	c0002	3720	24	6	8	10	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	c0003	3720	11	2	2	4	1	2	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	c0004	3720	9	5	1	0	0	3	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	c0005	3720	2	0	0	2	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	c0006	3720	2	1	1	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	c0007	3720	2	0	0	0	0	2	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	c0008	3720	2	2	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	c0009	3720	2	2	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	c0010	3720	2	1	0	1	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	c0011	3720	2	0	0	1	0	1	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	c0012	3720	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	c0013	3720	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	c0014	3720	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	c0015	3720	1	0	0	0	0	1	copy fasta	MECOM	chr3	169078507	169668712
MECP2_chrX_154016573_154102717	1/1	c0001	1461	212	68	31	91	5	15	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	c0002	1461	7	0	6	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	c0003	1461	2	0	0	2	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	c0004	1461	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	c0005	1461	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	c0006	1461	1	0	1	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	c0007	1462	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	c0008	1461	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	c0009	1461	1	0	0	0	0	1	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	c0010	1461	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	c0011	1461	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	c0012	1461	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECR_chr1_29187657_29235934	0/0	c0001	1122	244	63	53	89	7	32	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	1/1	c0002	1122	119	14	21	73	0	9	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	c0003	1122	13	12	1	0	0	0	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	c0004	1122	2	1	1	0	0	0	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	c0005	1122	1	0	0	0	1	0	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	c0006	1122	1	1	0	0	0	0	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	c0007	1122	1	0	0	0	0	1	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	c0008	1122	1	1	0	0	0	0	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	c0009	1122	1	0	1	0	0	0	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	c0010	1122	1	0	1	0	0	0	copy fasta	MECR	chr1	29187657	29235934
MED10_chr5_6366874_6383547	1/1	c0001	408	412	97	67	190	15	41	copy fasta	MED10	chr5	6366874	6383547
MED10_chr5_6366874_6383547	0/0	c0002	408	8	1	5	0	1	1	copy fasta	MED10	chr5	6366874	6383547
MED11_chr17_4726428_4738607	1/1	c0001	354	431	98	75	194	16	46	copy fasta	MED11	chr17	4726428	4738607
MED11_chr17_4726428_4738607	0/0	c0002	354	1	0	1	0	0	0	copy fasta	MED11	chr17	4726428	4738607
MED12L_chr3_151080664_151441653	0/0	c0001	6543	53	7	15	23	2	6	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	1/1	c0002	6543	46	7	3	25	7	2	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0003	6543	39	0	15	14	3	7	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0004	6543	22	4	3	11	0	4	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0005	6543	14	0	5	8	0	1	copy fasta	MED12L	chr3	151080664	151441653