JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MED12L_chr3_151080664_151441653	0/0	c0006	6543	10	0	4	1	2	3	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0007	6543	8	6	0	0	0	2	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0008	6543	7	1	0	6	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0009	6543	7	5	2	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0010	6543	7	4	0	3	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0011	6543	6	0	0	6	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0012	6543	6	3	0	1	0	2	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0013	6543	6	6	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0014	6543	5	4	1	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0015	6543	5	0	0	4	0	1	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0016	6543	4	2	2	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0017	6543	3	3	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0018	6543	2	2	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0019	6543	2	2	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0020	6543	2	0	0	2	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0021	6543	2	0	0	1	0	1	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0022	6543	2	0	1	0	0	1	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0023	6543	2	2	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0024	6543	2	2	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0025	6543	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0026	6543	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0027	6543	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0028	6543	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0029	6543	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0030	6543	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0031	6543	1	0	0	0	0	1	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0032	6543	1	0	0	0	0	1	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0033	6543	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0034	6514	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0035	6543	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0036	6543	1	0	1	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0037	6543	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0038	6543	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0039	6543	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0040	6543	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0041	6543	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	c0042	6543	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12_chrX_71113596_71147450	1/0	c0001	6534	213	61	34	88	3	26	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/1	c0002	6534	16	0	10	1	3	1	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0003	6534	10	1	6	3	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0004	6534	8	8	0	0	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0005	6546	3	3	0	0	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0006	6534	2	0	0	2	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0007	6534	2	0	2	0	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0008	6534	2	2	0	0	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0009	6534	1	1	0	0	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0010	6535	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0011	6533	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0012	6533	1	0	0	1	0	0	copy fasta	MED12	chrX	71113596	71147450
MED12_chrX_71113596_71147450	0/0	c0013	6534	1	1	0	0	0	0	copy fasta	MED12	chrX	71113596	71147450