JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MED16_chr19_862963_898187	0/0	c0002	2634	10	0	1	6	0	3	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0003	2634	6	4	1	1	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0004	2634	2	0	0	1	0	1	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0005	2634	2	0	0	2	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0006	2634	2	2	0	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0007	2634	2	1	0	1	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0008	2634	1	0	0	1	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0009	2634	1	0	0	0	0	1	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0010	2653	1	0	1	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0011	2634	1	0	1	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0012	2634	1	1	0	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0013	2634	1	1	0	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0014	2634	1	0	0	0	0	1	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0015	2634	1	1	0	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/1	c0016	2634	1	0	0	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0017	2634	1	1	0	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0018	2634	1	1	0	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0019	2634	1	0	1	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0020	2634	1	1	0	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0021	2634	1	0	1	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0022	2634	1	1	0	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0023	2634	1	1	0	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	c0024	2634	1	0	0	0	0	1	copy fasta	MED16	chr19	862963	898187
MED17_chr11_93779282_93819963	0/1	c0001	1956	144	12	18	93	5	15	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	1/0	c0002	1956	82	42	13	6	5	15	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	c0003	1956	43	3	8	27	2	3	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	c0004	1956	16	0	0	16	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	c0005	1956	8	6	2	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	c0006	1956	5	5	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	c0007	1956	5	5	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	c0008	1956	3	2	1	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	c0009	1956	3	3	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	c0010	1956	2	2	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	c0011	1956	2	0	2	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	c0012	1956	1	1	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	c0013	1956	1	1	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	c0014	1956	1	1	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	c0015	1956	1	1	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	c0016	1956	1	1	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	c0017	1956	1	1	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	c0018	1956	1	0	0	0	0	1	copy fasta	MED17	chr11	93779282	93819963
MED18_chr1_28324040_28340965	1/1	c0001	627	362	88	82	128	18	44	copy fasta	MED18	chr1	28324040	28340965
MED18_chr1_28324040_28340965	0/0	c0002	627	2	2	0	0	0	0	copy fasta	MED18	chr1	28324040	28340965
MED19_chr11_57698710_57717215	1/1	c0001	735	379	89	78	148	16	46	copy fasta	MED19	chr11	57698710	57717215
MED19_chr11_57698710_57717215	0/0	c0002	735	1	1	0	0	0	0	copy fasta	MED19	chr11	57698710	57717215
MED1_chr17_39399285_39456263	1/1	c0001	4746	256	66	51	99	12	26	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	c0002	4746	13	11	0	0	1	1	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	c0003	4746	3	3	0	0	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	c0004	4746	2	2	0	0	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	c0005	4746	1	0	0	1	0	0	copy fasta	MED1	chr17	39399285	39456263