JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MED1_chr17_39399285_39456263	0/0	c0006	4746	1	0	0	0	1	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	c0007	4746	1	0	1	0	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	c0008	4746	1	0	0	0	0	1	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	c0009	4746	1	0	0	1	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	c0010	4746	1	0	0	1	0	0	copy fasta	MED1	chr17	39399285	39456263
MED20_chr6_41900354_41926139	1/1	c0001	639	441	98	74	206	14	47	copy fasta	MED20	chr6	41900354	41926139
MED20_chr6_41900354_41926139	0/0	c0002	639	2	0	1	0	0	1	copy fasta	MED20	chr6	41900354	41926139
MED20_chr6_41900354_41926139	0/0	c0003	639	1	0	1	0	0	0	copy fasta	MED20	chr6	41900354	41926139
MED21_chr12_27017558_27035673	1/1	c0001	435	425	95	80	192	14	42	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	c0002	435	1	1	0	0	0	0	copy fasta	MED21	chr12	27017558	27035673
MED22_chr9_133333312_133353131	1/1	c0001	603	413	89	73	186	18	45	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	c0002	603	6	6	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	c0003	603	2	0	2	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	c0004	603	1	0	0	0	0	1	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	c0005	603	1	0	1	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	c0006	603	1	1	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED23_chr6_131581732_131633242	1/1	c0001	4107	311	86	49	132	12	30	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	c0002	4107	2	2	0	0	0	0	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	c0003	4107	2	0	1	1	0	0	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	c0004	4107	1	0	0	1	0	0	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	c0005	4107	1	1	0	0	0	0	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	c0006	4107	1	1	0	0	0	0	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	c0007	4107	1	0	0	1	0	0	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	c0008	4107	1	0	0	1	0	0	copy fasta	MED23	chr6	131581732	131633242
MED24_chr17_40014104_40059408	1/1	c0001	2970	222	46	35	112	7	20	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0002	2970	118	7	28	61	5	17	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0003	2970	24	11	5	0	4	4	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0004	2970	8	8	0	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0005	2970	4	4	0	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0006	2970	3	3	0	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0007	2970	3	3	0	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0008	2970	2	1	1	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0009	2970	2	2	0	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0010	2970	2	0	0	2	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0011	2970	1	0	0	1	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0012	2970	1	0	0	1	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0013	2970	1	1	0	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0014	2970	1	0	0	1	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0015	2970	1	0	0	1	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0016	2970	1	0	0	0	0	1	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0017	2970	1	1	0	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0018	2970	1	1	0	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0019	2970	1	0	1	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	c0020	2970	1	0	0	1	0	0	copy fasta	MED24	chr17	40014104	40059408
MED25_chr19_49813289_49841979	1/1	c0001	2244	318	70	69	130	12	35	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	c0002	2244	32	8	8	15	0	1	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	c0003	2244	25	1	2	17	0	5	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	c0004	2244	6	0	0	6	0	0	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	c0005	2244	4	4	0	0	0	0	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	c0006	2244	4	4	0	0	0	0	copy fasta	MED25	chr19	49813289	49841979