JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MED25_chr19_49813289_49841979	0/0	c0007	2244	3	0	0	0	0	3	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	c0008	2244	2	0	0	2	0	0	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	c0009	2244	2	2	0	0	0	0	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	c0010	2244	2	2	0	0	0	0	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	c0011	2244	1	0	0	1	0	0	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	c0012	2244	1	0	0	1	0	0	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	c0013	2244	1	0	0	0	0	1	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	c0014	2244	1	0	0	1	0	0	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	c0015	2244	1	0	1	0	0	0	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	c0016	2244	1	0	0	0	0	1	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	c0017	2244	1	0	0	1	0	0	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	c0018	2244	1	1	0	0	0	0	copy fasta	MED25	chr19	49813289	49841979
MED26_chr19_16569919_16633204	1/1	c0001	1803	248	64	60	77	6	39	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	c0002	1803	12	11	1	0	0	0	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	c0003	1803	2	0	1	0	0	1	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	c0004	1803	1	1	0	0	0	0	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	c0005	1803	1	1	0	0	0	0	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	c0006	1803	1	0	0	1	0	0	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	c0007	1803	1	1	0	0	0	0	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	c0008	1803	1	1	0	0	0	0	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	c0009	1803	1	1	0	0	0	0	copy fasta	MED26	chr19	16569919	16633204
MED27_chr9_131855112_132084867	1/1	c0001	936	273	94	52	101	4	20	copy fasta	MED27	chr9	131855112	132084867
MED27_chr9_131855112_132084867	0/0	c0002	936	1	0	0	1	0	0	copy fasta	MED27	chr9	131855112	132084867
MED28_chr4_17609641_17639105	1/1	c0001	537	322	94	70	104	14	38	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	c0002	537	3	3	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	c0003	537	2	0	0	2	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	c0004	537	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED29_chr19_39386378_39405641	1/1	c0001	603	380	94	75	155	16	38	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	c0002	603	4	0	0	4	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	c0003	603	3	0	0	3	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	c0004	603	1	0	1	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED30_chr8_117515713_117545262	1/1	c0001	537	341	80	71	146	14	28	copy fasta	MED30	chr8	117515713	117545262
MED30_chr8_117515713_117545262	0/0	c0002	537	3	3	0	0	0	0	copy fasta	MED30	chr8	117515713	117545262
MED30_chr8_117515713_117545262	0/0	c0003	537	2	2	0	0	0	0	copy fasta	MED30	chr8	117515713	117545262
MED30_chr8_117515713_117545262	0/0	c0004	537	1	1	0	0	0	0	copy fasta	MED30	chr8	117515713	117545262
MED30_chr8_117515713_117545262	0/0	c0005	537	1	0	1	0	0	0	copy fasta	MED30	chr8	117515713	117545262
MED31_chr17_6638311_6656605	1/1	c0001	396	427	96	72	196	16	45	copy fasta	MED31	chr17	6638311	6656605
MED31_chr17_6638311_6656605	0/0	c0002	396	1	0	0	0	0	1	copy fasta	MED31	chr17	6638311	6656605
MED4_chr13_48070724_48100104	1/1	c0001	813	401	83	69	186	17	44	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	c0002	813	3	3	0	0	0	0	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	c0003	813	1	0	0	0	1	0	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	c0004	813	1	0	1	0	0	0	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	c0005	813	1	0	0	1	0	0	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	c0006	813	1	0	0	1	0	0	copy fasta	MED4	chr13	48070724	48100104
MED6_chr14_70578221_70605655	1/1	c0001	741	397	80	64	193	12	46	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	c0002	741	6	6	0	0	0	0	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	c0003	741	1	0	0	1	0	0	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	c0004	741	1	0	0	1	0	0	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	c0005	741	1	0	0	1	0	0	copy fasta	MED6	chr14	70578221	70605655
MED7_chr5_157132424_157147865	1/1	c0001	702	367	86	66	160	12	41	copy fasta	MED7	chr5	157132424	157147865