JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MED7_chr5_157132424_157147865	0/0	c0002	702	7	7	0	0	0	0	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	c0003	702	5	0	0	4	0	1	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	c0004	702	4	1	3	0	0	0	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	c0005	702	1	0	1	0	0	0	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	c0006	702	1	1	0	0	0	0	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	c0007	702	1	1	0	0	0	0	copy fasta	MED7	chr5	157132424	157147865
MED8_chr1_43378917_43394800	1/1	c0001	807	377	96	69	160	13	37	copy fasta	MED8	chr1	43378917	43394800
MED8_chr1_43378917_43394800	0/0	c0002	807	2	0	0	0	2	0	copy fasta	MED8	chr1	43378917	43394800
MED8_chr1_43378917_43394800	0/0	c0003	807	1	0	0	0	0	1	copy fasta	MED8	chr1	43378917	43394800
MED8_chr1_43378917_43394800	0/0	c0004	807	1	0	0	0	1	0	copy fasta	MED8	chr1	43378917	43394800
MED8_chr1_43378917_43394800	0/0	c0005	807	1	0	1	0	0	0	copy fasta	MED8	chr1	43378917	43394800
MED9_chr17_17472000_17498221	1/1	c0001	441	328	84	57	146	8	31	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	c0002	441	65	3	17	31	8	6	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	c0003	441	9	9	0	0	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	c0004	410	1	0	0	1	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	c0005	441	1	0	0	0	0	1	copy fasta	MED9	chr17	17472000	17498221
MEDAG_chr13_30901271_30930572	0/1	c0001	912	360	52	64	186	14	43	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	c0002	912	33	15	10	4	0	4	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	c0003	912	16	15	1	0	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	c0004	912	11	3	3	0	4	1	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	c0005	912	10	0	0	9	0	1	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	c0006	912	5	4	0	0	0	1	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	1/0	c0007	912	4	3	0	0	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	c0008	912	4	3	1	0	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	c0009	912	4	3	1	0	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	c0010	912	2	2	0	0	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	c0011	912	1	0	0	1	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	c0012	912	1	0	0	1	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	c0013	912	1	0	0	1	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEF2A_chr15_99560984_99721488	0/0	c0001	1518	91	10	14	50	8	9	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0002	1512	65	1	12	34	4	14	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0003	1515	55	3	15	32	2	3	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0004	1518	32	22	5	3	0	2	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	1/0	c0005	1518	25	23	1	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0006	1518	15	0	6	7	0	2	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/1	c0007	1518	9	1	5	0	1	1	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0008	1524	9	7	2	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0009	1509	8	0	1	7	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0010	1515	8	8	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0011	1512	7	0	1	6	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0012	1518	6	5	1	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0013	1515	5	3	1	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0014	1512	5	0	0	4	0	1	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0015	1509	4	2	0	2	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0016	1527	3	0	0	3	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0017	1518	3	0	0	3	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0018	1497	3	0	0	3	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0019	1524	2	1	1	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0020	1521	2	1	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0021	1506	2	0	0	2	0	0	copy fasta	MEF2A	chr15	99560984	99721488