JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MEF2A_chr15_99560984_99721488	0/0	c0022	1515	2	0	2	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0023	1515	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0024	1537	1	0	1	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0025	1533	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0026	1527	1	0	0	0	0	1	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0027	1515	1	0	0	0	1	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0028	1518	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0029	1518	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0030	1515	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0031	1515	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0032	1482	1	0	0	0	0	1	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0033	1500	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0034	1518	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0035	1521	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0036	1512	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	c0037	1506	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2B_chr19_19140567_19175263	1/1	c0001	1107	360	78	62	167	14	37	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	c0002	1107	11	0	2	7	0	2	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	c0003	1107	9	1	0	5	0	3	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	c0004	1107	8	8	0	0	0	0	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	c0005	1107	6	0	0	6	0	0	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	c0006	1107	5	5	0	0	0	0	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	c0007	1107	1	0	0	0	0	1	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	c0008	1107	1	0	0	0	0	1	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	c0009	1107	1	0	0	1	0	0	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	c0010	1089	1	0	0	1	0	0	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	c0011	1107	1	0	0	1	0	0	copy fasta	MEF2B	chr19	19140567	19175263
MEF2C_chr5_88712117_88888184	1/1	c0001	1422	302	78	56	122	14	30	copy fasta	MEF2C	chr5	88712117	88888184
MEF2D_chr1_156458727_156505775	0/1	c0001	1566	119	28	26	43	7	14	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	c0002	1566	96	16	25	44	3	8	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	1/0	c0003	1566	64	52	7	0	2	2	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	c0004	1566	1	1	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	c0005	1566	1	1	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	c0006	1566	1	0	0	1	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEFV_chr16_3237027_3261633	0/1	c0001	2346	131	28	20	59	5	18	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0002	2346	64	5	14	34	6	5	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0003	2346	57	25	15	15	0	2	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0004	2346	30	14	7	9	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0005	2346	29	1	0	20	0	8	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0006	2346	24	2	15	3	2	2	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0007	2346	11	0	0	11	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0008	2346	6	0	3	2	0	1	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0009	2346	6	1	0	4	0	1	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0010	2346	5	0	0	5	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0011	2346	5	0	0	4	1	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0012	2346	4	0	0	4	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0013	2346	4	4	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0014	2346	3	1	0	2	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0015	2346	2	0	0	2	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0016	2346	2	0	0	0	0	2	copy fasta	MEFV	chr16	3237027	3261633