JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MEFV_chr16_3237027_3261633	0/0	c0017	2346	2	2	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0018	2346	2	1	1	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0019	2346	2	1	1	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0020	2346	2	0	0	2	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0021	2346	2	0	0	2	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0022	2346	2	0	0	2	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0023	2346	2	0	0	2	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0024	2346	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0025	2346	1	1	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0026	2346	1	1	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0027	2346	1	0	0	0	1	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0028	2346	1	0	0	0	1	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0029	2346	1	0	1	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0030	2346	1	1	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0031	2346	1	1	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0032	2346	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0033	2346	1	1	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0034	2346	1	1	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0035	2346	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0036	2346	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0037	2346	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0038	2346	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0039	2346	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0040	2346	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0041	2346	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0042	2346	1	1	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	1/0	c0043	2346	1	0	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0044	2346	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0045	2346	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0046	2346	1	0	1	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0047	2346	1	1	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0048	2346	1	1	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0049	2346	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0050	2346	1	0	0	0	0	1	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0051	2346	1	1	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0052	2346	1	1	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0053	2346	1	1	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	c0054	2346	1	1	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEGF10_chr5_127285796_127466222	0/1	c0001	3423	79	20	14	34	2	8	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0002	3423	65	9	18	25	4	9	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0003	3423	20	0	3	14	2	1	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0004	3423	12	9	3	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0005	3423	11	0	0	6	1	4	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0006	3423	9	0	0	9	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0007	3423	9	9	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0008	3423	7	7	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0009	3423	7	2	4	1	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	1/0	c0010	3423	5	1	2	0	1	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0011	3423	4	0	3	0	0	1	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0012	3423	4	3	1	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222