JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MEGF10_chr5_127285796_127466222	0/0	c0013	3423	3	0	0	3	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0014	3423	3	3	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0015	3423	2	0	0	2	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0016	3423	2	2	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0017	3423	2	2	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0018	3423	2	1	1	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0019	3423	2	2	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0020	3423	2	0	1	0	0	1	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0021	3423	2	0	2	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0022	3423	2	2	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0023	3423	1	0	0	1	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0024	3423	1	0	0	1	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0025	3423	1	0	0	1	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0026	3423	1	0	0	0	0	1	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0027	3423	1	1	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0028	3423	1	1	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0029	3423	1	1	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0030	3458	1	0	0	1	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0031	3423	1	1	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0032	3423	1	1	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0033	3423	1	0	0	1	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0034	3423	1	0	0	0	0	1	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0035	3423	1	0	0	1	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	c0036	3423	1	1	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF11_chr15_65890299_66258750	0/1	c0001	3423	79	27	24	13	5	9	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0002	3423	62	24	10	17	3	8	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0003	3423	7	2	2	0	2	1	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0004	3423	4	0	1	2	0	1	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0005	3423	3	3	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0006	3423	2	2	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0007	3423	2	0	0	0	0	2	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0008	3423	2	2	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0009	3423	2	2	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0010	3423	1	0	1	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0011	3423	1	1	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0012	3423	1	1	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0013	3423	1	0	0	1	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0014	3423	1	1	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0015	3423	1	0	0	0	0	1	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0016	3423	1	1	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	1/0	c0017	3423	1	0	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0018	3423	1	1	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0019	3423	1	1	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0020	3423	1	0	0	1	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0021	3423	1	0	0	0	0	1	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	c0022	3423	1	0	0	0	0	1	copy fasta	MEGF11	chr15	65890299	66258750
MEGF6_chr1_3482951_3616508	0/1	c0001	4626	32	4	13	9	1	4	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0002	4626	20	0	7	2	3	8	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0003	4626	18	0	3	10	0	5	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0004	4626	11	1	7	3	0	0	copy fasta	MEGF6	chr1	3482951	3616508