JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
MEGF6_chr1_3482951_3616508	0/0	c0055	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0056	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0057	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0058	4626	1	0	0	0	1	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0059	4626	1	0	0	1	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0060	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0061	4626	1	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0062	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0063	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0064	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0065	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0066	4626	1	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0067	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0068	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0069	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0070	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0071	4626	1	0	0	1	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0072	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0073	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0074	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0075	4626	1	0	0	1	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0076	4626	1	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0077	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0078	4626	1	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0079	4626	1	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0080	4626	1	0	0	1	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0081	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0082	4626	1	0	0	0	1	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0083	4626	1	0	0	1	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0084	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0085	4626	1	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0086	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0087	4626	1	0	0	1	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0088	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0089	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0090	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0091	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0092	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0093	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0094	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0095	4626	1	0	0	1	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0096	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0097	4626	1	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0098	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0099	4626	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0100	4626	1	0	0	0	1	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0101	4626	1	0	0	1	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0102	4626	1	0	0	1	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0103	4626	1	0	0	1	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	c0104	4626	1	0	0	0	1	copy fasta	MEGF6	chr1	3482951	3616508