JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MEI4_chr6_77648039_77932045	0/0	c0008	1158	1	0	1	0	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	c0009	1158	1	0	0	1	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	c0010	1158	1	0	0	1	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEIG1_chr10_14954388_14977857	0/1	c0001	267	226	53	52	80	9	31	copy fasta	MEIG1	chr10	14954388	14977857
MEIG1_chr10_14954388_14977857	1/0	c0002	267	202	40	24	115	5	17	copy fasta	MEIG1	chr10	14954388	14977857
MEIG1_chr10_14954388_14977857	0/0	c0003	267	8	0	4	0	4	0	copy fasta	MEIG1	chr10	14954388	14977857
MEIG1_chr10_14954388_14977857	0/0	c0004	267	5	0	0	5	0	0	copy fasta	MEIG1	chr10	14954388	14977857
MEIG1_chr10_14954388_14977857	0/0	c0005	267	1	1	0	0	0	0	copy fasta	MEIG1	chr10	14954388	14977857
MEIKIN_chr5_131801990_131950663	1/1	c0001	1122	195	56	38	80	6	13	copy fasta	MEIKIN	chr5	131801990	131950663
MEIKIN_chr5_131801990_131950663	0/0	c0002	1122	136	20	26	75	2	13	copy fasta	MEIKIN	chr5	131801990	131950663
MEIKIN_chr5_131801990_131950663	0/0	c0003	1122	10	10	0	0	0	0	copy fasta	MEIKIN	chr5	131801990	131950663
MEIKIN_chr5_131801990_131950663	0/0	c0004	1122	2	2	0	0	0	0	copy fasta	MEIKIN	chr5	131801990	131950663
MEIKIN_chr5_131801990_131950663	0/0	c0005	1122	1	0	0	1	0	0	copy fasta	MEIKIN	chr5	131801990	131950663
MEIKIN_chr5_131801990_131950663	0/0	c0006	1122	1	1	0	0	0	0	copy fasta	MEIKIN	chr5	131801990	131950663
MEIKIN_chr5_131801990_131950663	0/0	c0007	1122	1	1	0	0	0	0	copy fasta	MEIKIN	chr5	131801990	131950663
MEIOB_chr16_1828986_1877164	0/0	c0001	1416	196	51	34	84	5	22	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/1	c0002	1416	81	6	7	54	2	11	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	c0003	1416	69	17	17	29	1	5	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	c0004	1416	8	0	0	8	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	c0005	1416	6	0	0	2	0	4	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	c0006	1416	6	5	1	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	c0007	1416	3	2	0	1	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	c0008	1416	2	0	2	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	c0009	1416	2	2	0	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	c0010	1416	1	0	0	1	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	1/0	c0011	1416	1	0	0	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	c0012	1416	1	0	1	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	c0013	1416	1	1	0	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	c0014	1416	1	0	0	1	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	c0015	1416	1	1	0	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	c0016	1416	1	1	0	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOC_chr17_44651468_44680801	1/1	c0001	2859	268	47	55	126	10	28	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	c0002	2859	56	30	10	12	1	3	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	c0003	2859	10	9	1	0	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	c0004	2859	4	1	1	0	1	1	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	c0005	2859	2	0	0	0	1	1	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	c0006	2859	1	0	0	1	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	c0007	2859	1	0	0	0	1	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	c0008	2859	1	0	0	1	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	c0009	2859	1	1	0	0	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	c0010	2859	1	0	0	1	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	c0011	2869	1	0	0	0	0	1	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	c0012	2859	1	0	0	1	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	c0013	2859	1	0	1	0	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	c0014	2859	1	1	0	0	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	c0015	2859	1	0	0	1	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	c0016	2859	1	0	0	1	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	c0017	2859	1	1	0	0	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOSIN_chr19_45728439_45769541	0/0	c0001	1923	182	32	43	80	9	18	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/1	c0002	1917	67	18	11	29	4	4	copy fasta	MEIOSIN	chr19	45728439	45769541