Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCB5_chr7_20610667_20762008	0/0	c0064	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0065	3774	1	0	1	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0066	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0067	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0068	3774	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0069	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0070	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0071	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0072	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0073	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0074	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0075	3774	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0076	3774	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0077	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0078	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0079	3774	1	0	0	0	0	1	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0080	3774	1	0	0	0	1	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0081	3774	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0082	3774	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0083	3774	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0084	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0085	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0086	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0087	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0088	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0089	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0090	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0091	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0092	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0093	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0094	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0095	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0096	3774	1	0	1	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0097	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0098	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0099	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0100	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0101	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0102	3774	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0103	3774	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0104	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0105	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0106	3774	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0107	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0108	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0109	3774	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB6_chr2_219204772_219223958	0/0	c0001	2529	231	27	59	102	14	29	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	1/0	c0002	2529	94	46	9	30	0	8	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	c0003	2529	14	13	1	0	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	c0004	2529	3	0	3	0	0	0	copy fasta	ABCB6	chr2	219204772	219223958