JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD36_chr2_97108153_97269521	0/0	c0005	5646	9	2	5	0	2	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0006	5748	8	0	0	8	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0007	5646	8	1	4	0	2	1	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0008	5646	7	0	7	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0009	5748	7	5	2	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0010	5748	5	5	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0011	5644	5	0	0	4	0	1	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0012	5748	5	0	2	0	0	3	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0013	5748	4	0	0	1	0	3	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0014	5646	4	0	0	4	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0015	4920	4	0	0	4	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0016	5163	4	0	0	4	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0017	5548	3	0	2	0	0	1	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0018	5646	3	0	0	3	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0019	5748	2	0	0	2	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0020	5745	2	0	0	2	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0021	5646	2	2	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0022	5646	2	2	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0023	5748	2	0	0	0	0	2	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0024	5646	2	1	1	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0025	5748	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0026	5748	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0027	5748	1	0	0	0	0	1	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0028	5548	1	0	0	0	0	1	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0029	5748	1	0	1	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0030	5745	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0031	5393	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0032	5393	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0033	5748	1	1	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0034	5646	1	1	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0035	5136	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0036	5748	1	0	1	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0037	4818	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0038	5646	1	1	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0039	5646	1	1	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0040	5748	1	1	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0041	5748	1	0	1	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0042	4920	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0043	5748	1	1	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0044	5748	1	0	1	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0045	5748	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0046	5748	1	1	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0047	5748	1	0	1	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	1/0	c0048	5748	1	0	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0049	5748	1	0	0	0	0	1	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0050	4920	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0051	4920	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0052	5646	1	1	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0053	5748	1	0	0	0	0	1	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0054	5646	1	0	0	0	0	1	copy fasta	ANKRD36	chr2	97108153	97269521