JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MEIOSIN_chr19_45728439_45769541	1/0	c0003	1917	46	15	6	18	3	3	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0004	1917	12	12	0	0	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0005	1923	7	5	1	0	1	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0006	1917	7	0	5	0	1	1	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0007	1924	7	1	3	3	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0008	1918	3	0	0	3	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0009	1911	3	0	0	2	0	1	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0010	1923	3	0	2	0	0	1	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0011	1917	1	0	0	1	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0012	1923	1	0	0	0	0	1	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0013	1923	1	0	0	0	0	1	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0014	1923	1	0	0	1	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0015	1929	1	1	0	0	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0016	1917	1	0	1	0	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0017	1917	1	0	0	1	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0018	1918	1	0	0	1	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0019	1935	1	0	0	0	0	1	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0020	1923	1	0	0	1	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0021	1923	1	1	0	0	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0022	1923	1	0	0	1	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0023	1917	1	0	0	1	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0024	1923	1	0	0	1	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0025	1923	1	0	0	1	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0026	1923	1	1	0	0	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0027	1917	1	0	0	0	0	1	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0028	1917	1	1	0	0	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0029	1917	1	1	0	0	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0030	1917	1	0	1	0	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0031	1923	1	0	0	0	0	1	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0032	1924	1	0	1	0	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	c0033	1923	1	0	0	0	0	1	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIS1_chr2_66430125_66578869	1/1	c0001	1173	242	71	42	86	8	33	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	c0002	1173	2	0	0	2	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	c0003	1173	1	0	0	0	0	1	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	c0004	1173	1	1	0	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS2_chr15_36884204_37105549	1/1	c0001	1434	272	69	52	101	12	36	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	c0002	1434	1	0	0	1	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	c0003	1434	1	1	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS3_chr19_47398124_47424527	1/0	c0001	1128	242	68	57	76	12	28	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	c0002	1128	4	4	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	c0003	1128	1	1	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	c0004	1128	1	1	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	c0005	1128	1	1	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	c0006	1140	1	0	1	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	c0007	1128	1	1	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MELK_chr9_36567895_36682682	0/1	c0001	1956	138	29	31	49	1	27	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	1/0	c0002	1956	69	29	9	26	1	3	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	c0003	1956	9	9	0	0	0	0	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	c0004	1956	8	8	0	0	0	0	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	c0005	1956	5	5	0	0	0	0	copy fasta	MELK	chr9	36567895	36682682