JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MELK_chr9_36567895_36682682	0/0	c0006	1956	4	0	0	1	0	3	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	c0007	1956	3	3	0	0	0	0	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	c0008	1956	2	0	0	2	0	0	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	c0009	1956	2	0	0	2	0	0	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	c0010	1956	1	0	0	0	0	1	copy fasta	MELK	chr9	36567895	36682682
MELK_chr9_36567895_36682682	0/0	c0011	1956	1	1	0	0	0	0	copy fasta	MELK	chr9	36567895	36682682
MELTF_chr3_196996740_197034817	1/1	c0001	2217	263	46	60	107	11	37	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0002	2217	77	12	16	42	3	4	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0003	2217	22	14	1	6	0	1	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0004	2217	12	0	0	11	0	1	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0005	2217	3	3	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0006	2217	3	0	0	3	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0007	2217	2	2	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0008	2217	2	0	0	2	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0009	2217	2	2	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0010	2217	2	0	0	2	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0011	2217	2	1	1	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0012	2217	2	2	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0013	2217	2	0	0	2	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0014	2217	2	1	0	0	0	1	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0015	2217	2	0	0	2	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0016	2217	2	0	0	0	0	2	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0017	2217	1	1	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0018	2217	1	0	1	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0019	2217	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0020	2217	1	0	1	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0021	2217	1	0	0	0	0	1	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0022	2217	1	0	1	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0023	2217	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0024	2217	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0025	2217	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0026	2217	1	1	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0027	2217	1	0	0	0	0	1	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0028	2217	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0029	2217	1	0	1	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0030	2217	1	1	0	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0031	2217	1	0	1	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0032	2217	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0033	2217	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0034	2217	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0035	2217	1	0	0	1	0	0	copy fasta	MELTF	chr3	196996740	197034817
MELTF_chr3_196996740_197034817	0/0	c0036	2217	1	0	1	0	0	0	copy fasta	MELTF	chr3	196996740	197034817
MEMO1_chr2_31862823_32016008	1/1	c0001	894	303	80	61	124	12	24	copy fasta	MEMO1	chr2	31862823	32016008
MEMO1_chr2_31862823_32016008	0/0	c0002	894	1	0	1	0	0	0	copy fasta	MEMO1	chr2	31862823	32016008
MEN1_chr11_64798516_64815551	0/0	c0001	1833	199	57	50	64	9	19	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/1	c0002	1833	137	4	25	80	5	22	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	c0003	1833	74	22	3	49	0	0	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	1/0	c0004	1833	14	13	0	0	0	0	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	c0005	1833	3	0	0	0	2	1	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	c0006	1833	1	0	0	0	0	1	copy fasta	MEN1	chr11	64798516	64815551