JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MEN1_chr11_64798516_64815551	0/0	c0007	1833	1	0	0	1	0	0	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	c0008	1833	1	0	0	1	0	0	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	c0009	1833	1	0	0	1	0	0	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	c0010	1833	1	0	0	1	0	0	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	c0011	1833	1	0	0	0	0	1	copy fasta	MEN1	chr11	64798516	64815551
MEN1_chr11_64798516_64815551	0/0	c0012	1833	1	0	0	1	0	0	copy fasta	MEN1	chr11	64798516	64815551
MEOX1_chr17_43635389_43666922	1/1	c0001	765	323	50	69	150	10	42	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	c0002	765	41	35	4	0	0	2	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	c0003	765	6	0	0	6	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	c0004	765	3	3	0	0	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	c0005	765	2	2	0	0	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	c0006	765	2	0	0	0	0	2	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	c0007	765	1	0	1	0	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	c0008	765	1	1	0	0	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX1_chr17_43635389_43666922	0/0	c0009	765	1	1	0	0	0	0	copy fasta	MEOX1	chr17	43635389	43666922
MEOX2_chr7_15606212_15691683	0/0	c0001	912	176	71	36	44	7	18	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	1/1	c0002	915	103	12	27	35	8	19	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	c0003	912	57	3	2	52	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	c0004	915	7	0	3	4	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	c0005	912	1	1	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	c0006	912	1	0	0	0	1	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	c0007	912	1	0	0	1	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	c0008	912	1	1	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	c0009	912	1	0	0	0	0	1	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	c0010	912	1	1	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	c0011	912	1	1	0	0	0	0	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	c0012	915	1	0	0	0	0	1	copy fasta	MEOX2	chr7	15606212	15691683
MEOX2_chr7_15606212_15691683	0/0	c0013	912	1	0	0	0	0	1	copy fasta	MEOX2	chr7	15606212	15691683
MEP1A_chr6_46788389_46844778	0/0	c0001	2241	115	27	19	58	2	9	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	1/0	c0002	2241	93	5	19	55	3	10	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/1	c0003	2241	62	10	12	20	6	13	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0004	2241	21	18	1	2	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0005	2241	11	6	1	3	0	1	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0006	2241	10	4	5	0	0	1	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0007	2241	9	8	1	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0008	2241	6	0	0	6	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0009	2241	4	4	0	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0010	2241	4	0	0	0	2	2	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0011	2241	3	0	0	0	0	3	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0012	2241	2	2	0	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0013	2241	2	0	0	0	0	2	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0014	2241	1	0	0	0	0	1	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0015	2241	1	1	0	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0016	2241	1	0	0	0	1	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0017	2241	1	1	0	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0018	2241	1	1	0	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0019	2241	1	0	0	1	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0020	2241	1	0	1	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0021	2241	1	1	0	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1A_chr6_46788389_46844778	0/0	c0022	2241	1	0	0	1	0	0	copy fasta	MEP1A	chr6	46788389	46844778