JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MEP1A_chr6_46788389_46844778	0/0	c0023	2241	1	0	1	0	0	0	copy fasta	MEP1A	chr6	46788389	46844778
MEP1B_chr18_32185039_32225404	0/0	c0001	2106	157	30	34	72	7	14	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0002	2106	46	8	10	19	2	7	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0003	2106	45	7	3	33	0	2	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/1	c0004	2106	23	7	5	0	3	7	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0005	2106	19	4	3	7	3	2	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0006	2106	14	14	0	0	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0007	2106	10	6	3	0	1	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0008	2106	8	8	0	0	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0009	2106	6	0	0	5	0	1	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0010	2106	4	4	0	0	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0011	2106	3	1	1	0	0	1	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0012	2106	3	0	0	0	2	1	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0013	2106	2	2	0	0	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0014	2106	2	0	0	2	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0015	2106	1	0	0	1	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0016	2106	1	0	0	1	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0017	2106	1	1	0	0	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0018	2106	1	1	0	0	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0019	2106	1	0	0	0	0	1	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0020	2106	1	1	0	0	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	1/0	c0021	2106	1	0	0	0	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEP1B_chr18_32185039_32225404	0/0	c0022	2106	1	0	1	0	0	0	copy fasta	MEP1B	chr18	32185039	32225404
MEPCE_chr7_100424831_100439118	1/1	c0001	2070	285	61	48	129	10	35	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	c0002	2070	33	13	8	1	5	6	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	c0003	2070	18	18	0	0	0	0	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	c0004	2070	2	0	0	0	0	2	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	c0005	2070	1	1	0	0	0	0	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	c0006	2070	1	0	0	0	1	0	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	c0007	2070	1	0	0	0	0	1	copy fasta	MEPCE	chr7	100424831	100439118
MEPCE_chr7_100424831_100439118	0/0	c0008	2070	1	1	0	0	0	0	copy fasta	MEPCE	chr7	100424831	100439118
MEPE_chr4_87827969_87851792	1/1	c0001	1578	335	82	59	149	12	31	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	c0002	1578	91	7	20	51	4	9	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	c0003	1578	4	4	0	0	0	0	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	c0004	1578	3	0	0	3	0	0	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	c0005	1578	3	0	0	0	0	3	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	c0006	1578	2	2	0	0	0	0	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	c0007	1578	2	0	0	2	0	0	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	c0008	1578	2	2	0	0	0	0	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	c0009	1578	2	0	1	0	0	1	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	c0010	1578	1	0	0	1	0	0	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	c0011	1578	1	0	0	1	0	0	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	c0012	1578	1	1	0	0	0	0	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	c0013	1578	1	0	0	0	0	1	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	c0014	1578	1	0	0	1	0	0	copy fasta	MEPE	chr4	87827969	87851792
MEPE_chr4_87827969_87851792	0/0	c0015	1578	1	0	0	0	0	1	copy fasta	MEPE	chr4	87827969	87851792
MERTK_chr2_111893607_112034561	1/0	c0001	3000	114	25	28	42	2	16	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0002	3000	61	16	20	15	2	8	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0003	3000	45	0	10	21	6	8	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0004	3000	12	12	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561