JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MERTK_chr2_111893607_112034561	0/0	c0005	3000	10	5	1	1	2	1	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0006	3000	8	4	2	2	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0007	3000	5	5	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0008	3000	5	1	2	0	2	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0009	3000	3	2	1	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0010	3000	3	3	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/1	c0011	3000	3	0	2	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0012	3000	2	2	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0013	3000	2	1	1	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0014	3000	1	1	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0015	3000	1	1	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0016	3000	1	1	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0017	3000	1	1	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0018	3000	1	0	0	1	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0019	3000	1	1	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0020	3000	1	1	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0021	3000	1	1	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0022	3000	1	0	0	1	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0023	3000	1	0	0	1	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0024	3000	1	1	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0025	3000	1	1	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0026	3000	1	1	0	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0027	3000	1	0	1	0	0	0	copy fasta	MERTK	chr2	111893607	112034561
MERTK_chr2_111893607_112034561	0/0	c0028	3000	1	0	0	0	0	1	copy fasta	MERTK	chr2	111893607	112034561
MESD_chr15_80970752_80994819	1/1	c0001	705	411	90	82	181	14	42	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	c0002	705	3	3	0	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	c0003	705	2	2	0	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	c0004	705	1	1	0	0	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	c0005	705	1	0	0	1	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	c0006	705	1	0	0	1	0	0	copy fasta	MESD	chr15	80970752	80994819
MESD_chr15_80970752_80994819	0/0	c0007	705	1	0	0	1	0	0	copy fasta	MESD	chr15	80970752	80994819
MESP1_chr15_89744875_89756249	1/0	c0001	807	174	7	34	114	5	13	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0002	819	67	15	11	25	4	12	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0003	807	50	9	21	0	4	16	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0004	807	23	21	0	1	0	1	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0005	807	19	0	2	16	1	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0006	807	14	0	7	7	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0007	807	13	3	2	4	2	2	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0008	807	7	5	0	0	0	2	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0009	819	7	0	0	7	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0010	819	5	3	2	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0011	819	4	4	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0012	819	4	4	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0013	807	3	2	1	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0014	807	3	3	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0015	819	3	2	1	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0016	819	3	0	0	3	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0017	807	3	2	1	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0018	807	2	1	0	1	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0019	807	2	2	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249