JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MESP1_chr15_89744875_89756249	0/0	c0020	807	2	2	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/1	c0021	807	2	0	1	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0022	807	1	1	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0023	807	1	1	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0024	807	1	1	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0025	807	1	1	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0026	807	1	1	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0027	807	1	0	0	0	0	1	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0028	807	1	0	0	0	1	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0029	807	1	1	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0030	807	1	1	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0031	819	1	1	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0032	807	1	0	0	1	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0033	807	1	0	0	0	1	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0034	807	1	0	1	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0035	807	1	0	0	1	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0036	807	1	0	0	1	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0037	807	1	0	0	1	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0038	819	1	0	0	0	0	1	copy fasta	MESP1	chr15	89744875	89756249
MESP1_chr15_89744875_89756249	0/0	c0039	807	1	1	0	0	0	0	copy fasta	MESP1	chr15	89744875	89756249
MESP2_chr15_89771332_89783754	0/1	c0001	1170	178	13	32	108	8	16	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0002	1182	123	31	31	25	8	28	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0003	1194	24	19	3	0	0	2	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0004	1182	19	3	2	12	2	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0005	1182	8	8	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0006	1170	7	0	2	5	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0007	1182	5	4	1	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0008	1170	4	0	0	4	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0009	1182	3	3	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0010	1182	3	3	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0011	1170	3	0	0	3	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0012	1182	2	0	0	2	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0013	1170	2	2	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0014	1170	1	0	1	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0015	1170	1	1	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0016	1182	1	1	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0017	1170	1	0	0	1	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0018	1170	1	0	0	1	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0019	1182	1	0	0	1	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0020	1194	1	1	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0021	1182	1	1	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	1/0	c0022	1194	1	0	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0023	1171	1	0	0	1	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0024	1170	1	0	0	1	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0025	1182	1	1	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MESP2_chr15_89771332_89783754	0/0	c0026	1182	1	1	0	0	0	0	copy fasta	MESP2	chr15	89771332	89783754
MEST_chr7_130487085_130511465	1/1	c0001	1008	366	83	63	156	18	44	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	c0002	1008	6	4	2	0	0	0	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	c0003	1008	2	1	1	0	0	0	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	c0004	1008	1	1	0	0	0	0	copy fasta	MEST	chr7	130487085	130511465