JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MEST_chr7_130487085_130511465	0/0	c0005	1008	1	0	0	1	0	0	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	c0006	1008	1	0	0	1	0	0	copy fasta	MEST	chr7	130487085	130511465
MEST_chr7_130487085_130511465	0/0	c0007	1008	1	1	0	0	0	0	copy fasta	MEST	chr7	130487085	130511465
METAP1D_chr2_171994953_172087430	1/1	c0001	1008	279	80	59	85	12	41	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	c0002	1008	71	0	3	64	0	4	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	c0003	1008	4	0	2	2	0	0	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	c0004	1008	1	0	0	1	0	0	copy fasta	METAP1D	chr2	171994953	172087430
METAP1D_chr2_171994953_172087430	0/0	c0005	1008	1	0	0	0	0	1	copy fasta	METAP1D	chr2	171994953	172087430
METAP1_chr4_98990721_99067809	1/1	c0001	1161	334	90	65	134	12	31	copy fasta	METAP1	chr4	98990721	99067809
METAP1_chr4_98990721_99067809	0/0	c0002	1161	2	2	0	0	0	0	copy fasta	METAP1	chr4	98990721	99067809
METAP1_chr4_98990721_99067809	0/0	c0003	1161	1	0	1	0	0	0	copy fasta	METAP1	chr4	98990721	99067809
METAP1_chr4_98990721_99067809	0/0	c0004	1161	1	0	0	0	0	1	copy fasta	METAP1	chr4	98990721	99067809
METAP2_chr12_95469152_95520839	1/0	c0001	1437	321	82	65	127	9	37	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	c0002	1437	47	3	7	29	4	4	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/1	c0003	1437	11	0	2	4	3	1	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	c0004	1437	1	0	0	1	0	0	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	c0005	1437	1	0	0	1	0	0	copy fasta	METAP2	chr12	95469152	95520839
METAP2_chr12_95469152_95520839	0/0	c0006	1437	1	1	0	0	0	0	copy fasta	METAP2	chr12	95469152	95520839
METRNL_chr17_83074609_83100122	0/1	c0001	936	257	57	40	132	2	25	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0002	936	67	15	20	13	9	10	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0003	936	30	2	3	12	4	9	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0004	936	7	0	0	7	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0005	936	7	2	2	0	2	1	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0006	936	6	5	1	0	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0007	936	4	0	3	0	1	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0008	936	4	0	0	4	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0009	936	4	0	0	4	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0010	936	3	3	0	0	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0011	936	2	0	0	2	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0012	936	1	0	0	1	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0013	936	1	0	0	1	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0014	936	1	1	0	0	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0015	936	1	0	0	1	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0016	936	1	0	1	0	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0017	936	1	0	0	1	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0018	936	1	1	0	0	0	0	copy fasta	METRNL	chr17	83074609	83100122
METRNL_chr17_83074609_83100122	0/0	c0019	936	1	0	0	0	0	1	copy fasta	METRNL	chr17	83074609	83100122
METRN_chr16_710118_724655	1/1	c0001	882	372	80	78	158	10	44	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	c0002	882	7	0	0	6	0	1	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	c0003	882	6	6	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	c0004	882	4	4	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	c0005	882	2	2	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	c0006	882	2	0	0	1	1	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	c0007	882	2	2	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	c0008	882	1	0	0	1	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	c0009	900	1	1	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	c0010	882	1	0	0	1	0	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	c0011	882	1	0	0	0	0	1	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	c0012	882	1	0	0	0	1	0	copy fasta	METRN	chr16	710118	724655
METRN_chr16_710118_724655	0/0	c0013	882	1	0	0	1	0	0	copy fasta	METRN	chr16	710118	724655