JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
METRN_chr16_710118_724655	0/0	c0014	882	1	1	0	0	0	0	copy fasta	METRN	chr16	710118	724655
METTL13_chr1_171776660_171802716	1/1	c0001	2100	145	23	33	60	7	20	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0002	2100	134	25	21	71	3	14	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0003	2100	32	1	6	23	1	1	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0004	2100	32	26	3	0	0	3	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0005	2100	6	0	3	0	2	1	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0006	2100	5	0	0	5	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0007	2100	3	3	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0008	2100	3	0	3	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0009	2100	2	2	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0010	2100	2	2	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0011	2100	2	2	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0012	2100	1	1	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0013	2100	1	1	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0014	2100	1	0	0	1	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0015	2100	1	1	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0016	2100	1	1	0	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0017	2100	1	0	0	1	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0018	2100	1	0	0	0	0	1	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0019	2100	1	0	0	1	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0020	2100	1	0	0	1	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0021	2100	1	0	0	1	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0022	2100	1	0	1	0	0	0	copy fasta	METTL13	chr1	171776660	171802716
METTL13_chr1_171776660_171802716	0/0	c0023	2100	1	0	0	0	1	0	copy fasta	METTL13	chr1	171776660	171802716
METTL14_chr4_118680392_118720430	1/1	c0001	1371	336	84	66	137	16	31	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	c0002	1371	45	2	2	39	0	2	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	c0003	1371	4	3	0	1	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	c0004	1371	3	3	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	c0005	1371	2	1	0	0	0	1	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	c0006	1371	1	0	0	1	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL14_chr4_118680392_118720430	0/0	c0007	1371	1	1	0	0	0	0	copy fasta	METTL14	chr4	118680392	118720430
METTL15_chr11_28103388_28338507	0/1	c0001	1224	222	53	21	124	3	20	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	1/0	c0002	1224	85	10	17	40	1	16	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	c0003	1224	6	6	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	c0004	1224	6	6	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	c0005	1224	3	3	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	c0006	1224	2	0	0	2	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	c0007	1224	1	0	0	1	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	c0008	1224	1	1	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	c0009	1224	1	0	0	1	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	c0010	1224	1	0	0	1	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	c0011	1224	1	1	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	c0012	1224	1	0	0	1	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	c0013	1224	1	1	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL15_chr11_28103388_28338507	0/0	c0014	1224	1	1	0	0	0	0	copy fasta	METTL15	chr11	28103388	28338507
METTL16_chr17_2411049_2516888	1/1	c0001	1689	282	80	64	90	16	30	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	c0002	1689	9	1	3	0	0	5	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	c0003	1689	1	1	0	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	c0004	1689	1	0	1	0	0	0	copy fasta	METTL16	chr17	2411049	2516888
METTL16_chr17_2411049_2516888	0/0	c0005	1689	1	1	0	0	0	0	copy fasta	METTL16	chr17	2411049	2516888