JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
METTL22_chr16_8616698_8654654	0/1	c0001	1215	191	60	47	53	7	23	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0002	1215	81	1	11	55	6	8	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0003	1215	76	2	16	45	3	10	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0004	1215	11	11	0	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0005	1215	7	7	0	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0006	1215	5	4	1	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0007	1215	2	0	0	0	0	2	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0008	1215	2	2	0	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0009	1215	2	0	0	0	0	2	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0010	1215	2	0	0	0	0	2	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0011	1215	1	0	0	0	0	1	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0012	1215	1	1	0	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0013	1215	1	1	0	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0014	1215	1	0	0	0	0	1	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0015	1215	1	0	0	1	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0016	1215	1	1	0	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0017	1215	1	0	1	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	1/0	c0018	1215	1	0	0	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0019	1215	1	0	0	0	0	1	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0020	1215	1	1	0	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL22_chr16_8616698_8654654	0/0	c0021	1215	1	1	0	0	0	0	copy fasta	METTL22	chr16	8616698	8654654
METTL23_chr17_76721839_76738880	1/1	c0001	573	404	91	65	188	16	42	copy fasta	METTL23	chr17	76721839	76738880
METTL23_chr17_76721839_76738880	0/0	c0002	573	4	3	1	0	0	0	copy fasta	METTL23	chr17	76721839	76738880
METTL23_chr17_76721839_76738880	0/0	c0003	573	3	1	2	0	0	0	copy fasta	METTL23	chr17	76721839	76738880
METTL23_chr17_76721839_76738880	0/0	c0004	573	1	1	0	0	0	0	copy fasta	METTL23	chr17	76721839	76738880
METTL24_chr6_110238940_110363349	1/0	c0001	1101	127	30	24	58	0	14	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/1	c0002	1101	108	25	21	54	2	5	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	c0003	1101	16	15	1	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	c0004	1101	2	2	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	c0005	1101	2	2	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	c0006	1101	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	c0007	1101	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	c0008	1101	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	c0009	1101	1	0	1	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	c0010	1101	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	c0011	1101	1	0	1	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	c0012	1101	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	c0013	1101	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	c0014	1101	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	c0015	1101	1	0	0	1	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	c0016	1101	1	1	0	0	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	c0017	1101	1	0	0	0	0	1	copy fasta	METTL24	chr6	110238940	110363349
METTL24_chr6_110238940_110363349	0/0	c0018	1101	1	0	0	1	0	0	copy fasta	METTL24	chr6	110238940	110363349
METTL25B_chr1_156723469_156741960	0/1	c0001	1428	361	75	81	139	16	49	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	1/0	c0002	1428	8	7	0	0	0	0	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/0	c0003	1428	8	8	0	0	0	0	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/0	c0004	1428	4	4	0	0	0	0	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/0	c0005	1428	3	1	0	1	0	1	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/0	c0006	1428	2	0	2	0	0	0	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/0	c0007	1428	1	0	0	1	0	0	copy fasta	METTL25B	chr1	156723469	156741960