JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD36_chr2_97108153_97269521	0/0	c0055	5748	1	0	1	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0056	5646	1	0	1	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0057	5646	1	0	1	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0058	5748	1	0	0	0	0	1	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0059	5748	1	0	0	0	0	1	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0060	5748	1	1	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0061	5748	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	c0062	5544	1	0	0	0	0	1	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD37_chr4_185391841_185405241	0/0	c0001	720	182	23	41	85	9	24	copy fasta	ANKRD37	chr4	185391841	185405241
ANKRD37_chr4_185391841_185405241	1/1	c0002	720	85	48	18	4	2	11	copy fasta	ANKRD37	chr4	185391841	185405241
ANKRD37_chr4_185391841_185405241	0/0	c0003	720	41	16	1	17	1	6	copy fasta	ANKRD37	chr4	185391841	185405241
ANKRD37_chr4_185391841_185405241	0/0	c0004	720	2	0	0	0	0	2	copy fasta	ANKRD37	chr4	185391841	185405241
ANKRD37_chr4_185391841_185405241	0/0	c0005	720	2	2	0	0	0	0	copy fasta	ANKRD37	chr4	185391841	185405241
ANKRD37_chr4_185391841_185405241	0/0	c0006	720	1	1	0	0	0	0	copy fasta	ANKRD37	chr4	185391841	185405241
ANKRD37_chr4_185391841_185405241	0/0	c0007	720	1	0	0	0	0	1	copy fasta	ANKRD37	chr4	185391841	185405241
ANKRD37_chr4_185391841_185405241	0/0	c0008	720	1	1	0	0	0	0	copy fasta	ANKRD37	chr4	185391841	185405241
ANKRD37_chr4_185391841_185405241	0/0	c0009	720	1	0	0	1	0	0	copy fasta	ANKRD37	chr4	185391841	185405241
ANKRD37_chr4_185391841_185405241	0/0	c0010	720	1	1	0	0	0	0	copy fasta	ANKRD37	chr4	185391841	185405241
ANKRD37_chr4_185391841_185405241	0/0	c0011	720	1	0	0	1	0	0	copy fasta	ANKRD37	chr4	185391841	185405241
ANKRD39_chr2_96842990_96863016	1/1	c0001	552	306	95	58	114	8	29	copy fasta	ANKRD39	chr2	96842990	96863016
ANKRD39_chr2_96842990_96863016	0/0	c0002	552	2	0	0	2	0	0	copy fasta	ANKRD39	chr2	96842990	96863016
ANKRD39_chr2_96842990_96863016	0/0	c0003	552	1	1	0	0	0	0	copy fasta	ANKRD39	chr2	96842990	96863016
ANKRD39_chr2_96842990_96863016	0/0	c0004	552	1	0	1	0	0	0	copy fasta	ANKRD39	chr2	96842990	96863016
ANKRD39_chr2_96842990_96863016	0/0	c0005	552	1	0	1	0	0	0	copy fasta	ANKRD39	chr2	96842990	96863016
ANKRD39_chr2_96842990_96863016	0/0	c0006	552	1	0	1	0	0	0	copy fasta	ANKRD39	chr2	96842990	96863016
ANKRD39_chr2_96842990_96863016	0/0	c0007	552	1	0	1	0	0	0	copy fasta	ANKRD39	chr2	96842990	96863016
ANKRD39_chr2_96842990_96863016	0/0	c0008	552	1	0	0	0	0	1	copy fasta	ANKRD39	chr2	96842990	96863016
ANKRD40CL_chr17_50756030_50772518	1/1	c0001	345	443	90	76	214	15	46	copy fasta	ANKRD40CL	chr17	50756030	50772518
ANKRD40CL_chr17_50756030_50772518	0/0	c0002	305	9	8	1	0	0	0	copy fasta	ANKRD40CL	chr17	50756030	50772518
ANKRD40CL_chr17_50756030_50772518	0/0	c0003	345	2	0	1	0	1	0	copy fasta	ANKRD40CL	chr17	50756030	50772518
ANKRD40CL_chr17_50756030_50772518	0/0	c0004	345	1	0	0	1	0	0	copy fasta	ANKRD40CL	chr17	50756030	50772518
ANKRD40CL_chr17_50756030_50772518	0/0	c0005	345	1	0	0	1	0	0	copy fasta	ANKRD40CL	chr17	50756030	50772518
ANKRD40_chr17_50688198_50712914	1/1	c0001	1107	349	73	68	154	16	36	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	c0002	1110	22	7	5	10	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	c0003	1107	14	0	1	13	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	c0004	1107	2	0	0	2	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	c0005	1107	2	0	0	2	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD40_chr17_50688198_50712914	0/0	c0006	1107	1	0	0	1	0	0	copy fasta	ANKRD40	chr17	50688198	50712914
ANKRD42_chr11_83188712_83253971	1/1	c0001	1584	320	73	55	146	15	29	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	c0002	1584	10	7	2	0	1	0	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	c0003	1584	8	4	4	0	0	0	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	c0004	1584	4	0	0	4	0	0	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	c0005	1584	1	0	0	1	0	0	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	c0006	1584	1	1	0	0	0	0	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	c0007	1584	1	1	0	0	0	0	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	c0008	1584	1	0	0	0	0	1	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	c0009	1584	1	0	1	0	0	0	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	c0010	1584	1	1	0	0	0	0	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	c0011	1584	1	1	0	0	0	0	copy fasta	ANKRD42	chr11	83188712	83253971
ANKRD42_chr11_83188712_83253971	0/0	c0012	1584	1	0	0	1	0	0	copy fasta	ANKRD42	chr11	83188712	83253971