JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
METTL25B_chr1_156723469_156741960	0/0	c0008	1428	1	0	0	1	0	0	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/0	c0009	1428	1	1	0	0	0	0	copy fasta	METTL25B	chr1	156723469	156741960
METTL25B_chr1_156723469_156741960	0/0	c0010	1428	1	0	1	0	0	0	copy fasta	METTL25B	chr1	156723469	156741960
METTL25_chr12_82353529_82484239	0/0	c0001	1812	80	33	17	12	6	12	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	1/0	c0002	1812	13	12	0	0	0	0	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/0	c0003	1812	11	2	3	1	2	3	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/0	c0004	1812	7	7	0	0	0	0	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/0	c0005	1812	6	6	0	0	0	0	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/0	c0006	1812	5	1	2	0	2	0	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/0	c0007	1812	3	3	0	0	0	0	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/0	c0008	1812	1	0	0	0	0	1	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/0	c0009	1812	1	1	0	0	0	0	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/1	c0010	1812	1	0	0	0	0	0	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/0	c0011	1812	1	1	0	0	0	0	copy fasta	METTL25	chr12	82353529	82484239
METTL25_chr12_82353529_82484239	0/0	c0012	1812	1	0	0	1	0	0	copy fasta	METTL25	chr12	82353529	82484239
METTL26_chr16_629430_641305	1/1	c0001	615	392	90	80	159	14	47	copy fasta	METTL26	chr16	629430	641305
METTL26_chr16_629430_641305	0/0	c0002	615	3	3	0	0	0	0	copy fasta	METTL26	chr16	629430	641305
METTL26_chr16_629430_641305	0/0	c0003	615	2	0	2	0	0	0	copy fasta	METTL26	chr16	629430	641305
METTL26_chr16_629430_641305	0/0	c0004	615	2	0	0	2	0	0	copy fasta	METTL26	chr16	629430	641305
METTL26_chr16_629430_641305	0/0	c0005	615	1	1	0	0	0	0	copy fasta	METTL26	chr16	629430	641305
METTL26_chr16_629430_641305	0/0	c0006	615	1	1	0	0	0	0	copy fasta	METTL26	chr16	629430	641305
METTL26_chr16_629430_641305	0/0	c0007	615	1	0	0	1	0	0	copy fasta	METTL26	chr16	629430	641305
METTL26_chr16_629430_641305	0/0	c0008	615	1	1	0	0	0	0	copy fasta	METTL26	chr16	629430	641305
METTL26_chr16_629430_641305	0/0	c0009	615	1	0	0	0	0	1	copy fasta	METTL26	chr16	629430	641305
METTL27_chr7_73829590_73847516	1/0	c0001	738	179	53	29	69	7	20	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/1	c0002	738	163	26	47	68	4	17	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	c0003	738	15	15	0	0	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	c0004	738	3	0	1	0	1	1	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	c0005	738	3	0	0	3	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	c0006	738	1	0	1	0	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	c0007	738	1	0	1	0	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	c0008	738	1	0	0	1	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	c0009	738	1	0	0	1	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	c0010	738	1	0	0	1	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	c0011	738	1	0	0	1	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	c0012	738	1	0	1	0	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	c0013	738	1	1	0	0	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL27_chr7_73829590_73847516	0/0	c0014	738	1	1	0	0	0	0	copy fasta	METTL27	chr7	73829590	73847516
METTL2A_chr17_62418897_62458385	0/1	c0001	1137	340	72	70	162	8	27	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	c0002	1137	20	18	2	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	c0003	1137	1	0	1	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	c0004	1137	1	0	0	0	0	1	copy fasta	METTL2A	chr17	62418897	62458385
METTL2A_chr17_62418897_62458385	0/0	c0005	1137	1	0	1	0	0	0	copy fasta	METTL2A	chr17	62418897	62458385
METTL2B_chr7_128471748_128511602	0/0	c0001	1137	128	35	12	59	6	16	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	c0002	1137	91	29	25	20	3	14	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	c0003	1137	88	9	21	50	3	5	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	c0004	1137	60	0	6	49	0	5	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	1/0	c0005	1137	15	14	0	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	c0006	1137	9	1	6	1	1	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	c0007	1137	5	0	0	5	0	0	copy fasta	METTL2B	chr7	128471748	128511602