JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
METTL2B_chr7_128471748_128511602	0/1	c0008	1137	3	0	1	0	1	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	c0009	1137	3	0	0	3	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	c0010	1137	1	0	0	1	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	c0011	1137	1	0	1	0	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	c0012	1137	1	0	0	1	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL2B_chr7_128471748_128511602	0/0	c0013	1137	1	0	0	1	0	0	copy fasta	METTL2B	chr7	128471748	128511602
METTL3_chr14_21493138_21516340	0/0	c0001	1743	217	38	30	123	6	20	copy fasta	METTL3	chr14	21493138	21516340
METTL3_chr14_21493138_21516340	1/1	c0002	1743	198	56	42	64	10	24	copy fasta	METTL3	chr14	21493138	21516340
METTL3_chr14_21493138_21516340	0/0	c0003	1743	3	3	0	0	0	0	copy fasta	METTL3	chr14	21493138	21516340
METTL3_chr14_21493138_21516340	0/0	c0004	1743	2	0	0	2	0	0	copy fasta	METTL3	chr14	21493138	21516340
METTL3_chr14_21493138_21516340	0/0	c0005	1743	2	2	0	0	0	0	copy fasta	METTL3	chr14	21493138	21516340
METTL3_chr14_21493138_21516340	0/0	c0006	1743	1	0	0	1	0	0	copy fasta	METTL3	chr14	21493138	21516340
METTL3_chr14_21493138_21516340	0/0	c0007	1743	1	1	0	0	0	0	copy fasta	METTL3	chr14	21493138	21516340
METTL3_chr14_21493138_21516340	0/0	c0008	1743	1	0	0	1	0	0	copy fasta	METTL3	chr14	21493138	21516340
METTL3_chr14_21493138_21516340	0/0	c0009	1743	1	0	0	1	0	0	copy fasta	METTL3	chr14	21493138	21516340
METTL4_chr18_2532530_2576505	0/1	c0001	1419	169	49	26	57	12	24	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	c0002	1419	159	7	28	105	6	13	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	c0003	1419	35	12	2	21	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	1/0	c0004	1419	17	13	3	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	c0005	1419	14	10	4	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	c0006	1419	3	0	3	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	c0007	1419	2	2	0	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	c0008	1419	1	0	1	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	c0009	1419	1	0	1	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	c0010	1419	1	1	0	0	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	c0011	1419	1	0	0	0	0	1	copy fasta	METTL4	chr18	2532530	2576505
METTL4_chr18_2532530_2576505	0/0	c0012	1419	1	0	0	1	0	0	copy fasta	METTL4	chr18	2532530	2576505
METTL5_chr2_169806757_169829905	1/1	c0001	630	386	88	63	177	15	41	copy fasta	METTL5	chr2	169806757	169829905
METTL5_chr2_169806757_169829905	0/0	c0002	630	12	5	2	3	1	1	copy fasta	METTL5	chr2	169806757	169829905
METTL5_chr2_169806757_169829905	0/0	c0003	630	7	0	0	7	0	0	copy fasta	METTL5	chr2	169806757	169829905
METTL5_chr2_169806757_169829905	0/0	c0004	630	4	4	0	0	0	0	copy fasta	METTL5	chr2	169806757	169829905
METTL5_chr2_169806757_169829905	0/0	c0005	630	2	1	1	0	0	0	copy fasta	METTL5	chr2	169806757	169829905
METTL5_chr2_169806757_169829905	0/0	c0006	630	1	0	0	1	0	0	copy fasta	METTL5	chr2	169806757	169829905
METTL6_chr3_15404760_15432544	1/1	c0001	855	403	94	69	180	12	46	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	c0002	855	2	2	0	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL6_chr3_15404760_15432544	0/0	c0003	855	1	0	1	0	0	0	copy fasta	METTL6	chr3	15404760	15432544
METTL8_chr2_171310746_171438990	1/1	c0001	1224	226	34	43	118	5	24	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	c0002	1224	55	24	7	21	0	3	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	c0003	1224	25	10	9	0	3	3	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	c0004	1224	5	5	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	c0005	1224	4	4	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	c0006	1224	4	0	0	4	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	c0007	1267	3	3	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	c0008	1224	3	3	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	c0009	1224	1	0	1	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	c0010	1224	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	c0011	1224	1	0	0	1	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	c0012	1224	1	0	0	1	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	c0013	1224	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL8_chr2_171310746_171438990	0/0	c0014	1224	1	1	0	0	0	0	copy fasta	METTL8	chr2	171310746	171438990