JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
METTL8_chr2_171310746_171438990	0/0	c0015	1224	1	0	0	1	0	0	copy fasta	METTL8	chr2	171310746	171438990
METTL9_chr16_21594577_21662471	1/1	c0001	957	337	68	66	155	10	36	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	c0002	957	21	0	0	19	0	2	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	c0003	957	4	0	0	4	0	0	copy fasta	METTL9	chr16	21594577	21662471
METTL9_chr16_21594577_21662471	0/0	c0004	957	2	2	0	0	0	0	copy fasta	METTL9	chr16	21594577	21662471
MET_chr7_116667196_116803377	1/1	c0001	4173	108	32	24	36	2	12	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0002	4173	103	5	22	55	4	17	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0003	4173	55	4	9	34	2	6	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0004	4173	20	20	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0005	4173	15	14	1	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0006	4173	6	0	2	4	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0007	4173	5	5	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0008	4173	4	1	2	0	1	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0009	4173	4	4	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0010	4173	3	0	0	3	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0011	4173	2	0	0	2	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0012	4173	2	2	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0013	4173	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0014	4173	1	0	0	1	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0015	4173	1	0	0	1	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0016	4173	1	0	0	0	1	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0017	4173	1	0	0	1	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0018	4173	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0019	4173	1	0	0	0	0	1	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0020	4173	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0021	4173	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0022	4173	1	0	0	1	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0023	4173	1	1	0	0	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0024	4173	1	0	0	1	0	0	copy fasta	MET	chr7	116667196	116803377
MET_chr7_116667196_116803377	0/0	c0025	4173	1	0	0	1	0	0	copy fasta	MET	chr7	116667196	116803377
MEX3A_chr1_156067013_156087465	1/1	c0001	1563	327	81	58	134	12	40	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	c0002	1563	8	8	0	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	c0003	1563	1	0	0	1	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	c0004	1563	1	1	0	0	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	c0005	1563	1	0	0	1	0	0	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	c0006	1563	1	0	0	0	0	1	copy fasta	MEX3A	chr1	156067013	156087465
MEX3A_chr1_156067013_156087465	0/0	c0007	1563	1	0	0	0	0	1	copy fasta	MEX3A	chr1	156067013	156087465
MEX3B_chr15_82036778_82051018	1/1	c0001	1710	420	94	77	195	16	36	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	c0002	1710	19	0	3	7	0	9	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	c0003	1710	3	0	3	0	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	c0004	1710	1	0	0	1	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	c0005	1710	1	0	0	0	0	1	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	c0006	1710	1	0	0	1	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	c0007	1710	1	0	0	1	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	c0008	1710	1	0	1	0	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	c0009	1710	1	0	0	1	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	c0010	1710	1	0	0	1	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3B_chr15_82036778_82051018	0/0	c0011	1710	1	0	0	1	0	0	copy fasta	MEX3B	chr15	82036778	82051018
MEX3C_chr18_51169550_51202681	0/0	c0001	1980	228	41	44	115	9	19	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/1	c0002	1971	92	14	13	47	7	10	copy fasta	MEX3C	chr18	51169550	51202681