JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MEX3C_chr18_51169550_51202681	1/0	c0003	1980	16	15	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	c0004	1986	13	0	0	12	0	1	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	c0005	1980	8	8	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	c0006	1980	3	0	0	3	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	c0007	1980	2	0	2	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	c0008	1971	2	0	0	0	0	2	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	c0009	1980	1	0	1	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	c0010	1980	1	0	1	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	c0011	1980	1	0	1	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	c0012	1971	1	0	0	1	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	c0013	1971	1	1	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	c0014	1980	1	1	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	c0015	1980	1	1	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	c0016	1980	1	1	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	c0017	1971	1	0	0	1	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	c0018	1980	1	1	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	c0019	1980	1	1	0	0	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3C_chr18_51169550_51202681	0/0	c0020	1980	1	0	0	1	0	0	copy fasta	MEX3C	chr18	51169550	51202681
MEX3D_chr19_1549672_1573325	1/1	c0001	1956	275	64	61	101	13	34	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0002	1956	49	0	4	43	0	2	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0003	1956	10	0	4	0	5	1	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0004	1956	5	5	0	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0005	1956	4	1	3	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0006	1956	3	0	0	3	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0007	1956	3	0	3	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0008	1956	3	3	0	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0009	1956	2	0	0	2	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0010	1956	2	2	0	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0011	1956	2	0	2	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0012	1956	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0013	1956	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0014	1956	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0015	1956	1	1	0	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0016	1956	1	0	0	0	0	1	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0017	1956	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0018	1956	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0019	1956	1	0	1	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0020	1956	1	1	0	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0021	1956	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0022	1956	1	1	0	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0023	1956	1	0	1	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0024	1956	1	0	1	0	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MEX3D_chr19_1549672_1573325	0/0	c0025	1956	1	0	0	1	0	0	copy fasta	MEX3D	chr19	1549672	1573325
MFAP1_chr15_43799492_43829690	1/1	c0001	1320	245	63	34	113	9	24	copy fasta	MFAP1	chr15	43799492	43829690
MFAP1_chr15_43799492_43829690	0/0	c0002	1320	87	23	13	44	1	6	copy fasta	MFAP1	chr15	43799492	43829690
MFAP1_chr15_43799492_43829690	0/0	c0003	1320	4	0	0	4	0	0	copy fasta	MFAP1	chr15	43799492	43829690
MFAP1_chr15_43799492_43829690	0/0	c0004	1320	2	2	0	0	0	0	copy fasta	MFAP1	chr15	43799492	43829690
MFAP1_chr15_43799492_43829690	0/0	c0005	1320	1	0	1	0	0	0	copy fasta	MFAP1	chr15	43799492	43829690
MFAP1_chr15_43799492_43829690	0/0	c0006	1320	1	0	0	1	0	0	copy fasta	MFAP1	chr15	43799492	43829690
MFAP2_chr1_16969502_16985620	0/1	c0001	552	164	54	36	50	8	15	copy fasta	MFAP2	chr1	16969502	16985620