JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MFAP2_chr1_16969502_16985620	0/0	c0002	552	159	15	32	103	5	4	copy fasta	MFAP2	chr1	16969502	16985620
MFAP2_chr1_16969502_16985620	1/0	c0003	552	80	25	6	32	3	13	copy fasta	MFAP2	chr1	16969502	16985620
MFAP2_chr1_16969502_16985620	0/0	c0004	552	2	2	0	0	0	0	copy fasta	MFAP2	chr1	16969502	16985620
MFAP2_chr1_16969502_16985620	0/0	c0005	552	1	0	1	0	0	0	copy fasta	MFAP2	chr1	16969502	16985620
MFAP2_chr1_16969502_16985620	0/0	c0006	552	1	0	1	0	0	0	copy fasta	MFAP2	chr1	16969502	16985620
MFAP2_chr1_16969502_16985620	0/0	c0007	552	1	0	0	1	0	0	copy fasta	MFAP2	chr1	16969502	16985620
MFAP3L_chr4_169981602_170031395	1/1	c0001	1230	294	65	51	114	16	46	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	c0002	1230	24	24	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	c0003	1230	7	0	1	6	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	c0004	1230	1	1	0	0	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	c0005	1230	1	0	0	1	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3L_chr4_169981602_170031395	0/0	c0006	1230	1	0	0	1	0	0	copy fasta	MFAP3L	chr4	169981602	170031395
MFAP3_chr5_154033967_154062450	0/0	c0001	1089	299	64	46	147	9	33	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	1/1	c0002	1089	108	32	25	33	5	11	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	c0003	1089	1	0	0	0	0	1	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	c0004	1089	1	0	0	1	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	c0005	1089	1	0	0	1	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	c0006	1089	1	1	0	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	c0007	1089	1	0	0	0	0	1	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	c0008	1089	1	0	1	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP3_chr5_154033967_154062450	0/0	c0009	1089	1	1	0	0	0	0	copy fasta	MFAP3	chr5	154033967	154062450
MFAP4_chr17_19378445_19392190	1/1	c0001	768	352	77	71	147	14	41	copy fasta	MFAP4	chr17	19378445	19392190
MFAP4_chr17_19378445_19392190	0/0	c0002	768	12	7	1	1	0	3	copy fasta	MFAP4	chr17	19378445	19392190
MFAP4_chr17_19378445_19392190	0/0	c0003	768	3	3	0	0	0	0	copy fasta	MFAP4	chr17	19378445	19392190
MFAP4_chr17_19378445_19392190	0/0	c0004	768	1	1	0	0	0	0	copy fasta	MFAP4	chr17	19378445	19392190
MFAP5_chr12_8640943_8667826	1/1	c0001	522	370	91	70	149	12	46	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	c0002	522	1	0	0	1	0	0	copy fasta	MFAP5	chr12	8640943	8667826
MFAP5_chr12_8640943_8667826	0/0	c0003	522	1	1	0	0	0	0	copy fasta	MFAP5	chr12	8640943	8667826
MFF_chr2_227320251_227362833	1/1	c0001	876	305	65	41	155	9	33	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	c0002	876	63	22	8	27	5	1	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	c0003	876	33	8	7	16	0	2	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	c0004	876	4	1	0	1	0	2	copy fasta	MFF	chr2	227320251	227362833
MFF_chr2_227320251_227362833	0/0	c0005	876	1	0	0	1	0	0	copy fasta	MFF	chr2	227320251	227362833
MFGE8_chr15_88893683_88918379	1/1	c0001	1164	139	16	20	83	3	15	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	c0002	1164	104	30	13	57	1	3	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	c0003	1164	77	21	22	21	8	5	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	c0004	1164	63	13	14	16	6	14	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	c0005	1164	20	5	3	8	0	4	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	c0006	1164	19	11	0	8	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	c0007	1164	3	0	0	0	0	3	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	c0008	1164	2	0	2	0	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	c0009	1164	2	0	0	0	0	2	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	c0010	1164	1	0	0	0	0	1	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	c0011	1164	1	0	1	0	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	c0012	1164	1	0	0	0	0	1	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	c0013	1164	1	0	0	1	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	c0014	1164	1	0	0	1	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	c0015	1164	1	0	0	1	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFGE8_chr15_88893683_88918379	0/0	c0016	1191	1	0	1	0	0	0	copy fasta	MFGE8	chr15	88893683	88918379
MFHAS1_chr8_8778354_8898630	0/0	c0001	3159	214	42	42	93	9	28	copy fasta	MFHAS1	chr8	8778354	8898630