JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MFHAS1_chr8_8778354_8898630	0/0	c0002	3159	29	3	8	11	0	7	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0003	3159	25	12	8	0	2	3	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0004	3159	12	11	1	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0005	3159	7	7	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	1/0	c0006	3159	7	2	3	0	1	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0007	3159	4	0	0	4	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/1	c0008	3159	3	0	0	0	0	2	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0009	3159	3	0	0	3	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0010	3159	3	3	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0011	3159	2	2	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0012	3159	2	0	2	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0013	3159	2	2	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0014	3159	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0015	3147	1	0	0	1	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0016	3159	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0017	3159	1	0	1	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0018	3159	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0019	3159	1	0	1	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0020	3159	1	0	0	0	0	1	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0021	3159	1	1	0	0	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0022	3159	1	0	0	0	0	1	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0023	3159	1	0	0	1	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFHAS1_chr8_8778354_8898630	0/0	c0024	3159	1	0	0	1	0	0	copy fasta	MFHAS1	chr8	8778354	8898630
MFN1_chr3_179342709_179399936	1/1	c0001	2226	385	88	77	167	12	39	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	c0002	2226	6	0	0	1	0	5	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	c0003	2226	2	0	0	2	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	c0004	2226	2	0	0	2	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	c0005	2226	2	2	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	c0006	2226	1	0	1	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	c0007	2226	1	1	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	c0008	2226	1	1	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	c0009	2226	1	1	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN1_chr3_179342709_179399936	0/0	c0010	2226	1	1	0	0	0	0	copy fasta	MFN1	chr3	179342709	179399936
MFN2_chr1_11975444_12018508	1/0	c0001	2274	340	78	58	150	14	39	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	c0002	2274	21	1	3	12	0	5	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	c0003	2274	8	6	2	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	c0004	2274	6	0	0	6	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	c0005	2274	3	3	0	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/1	c0006	2274	3	1	0	0	0	1	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	c0007	2274	2	2	0	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	c0008	2274	2	0	0	1	0	1	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	c0009	2274	1	0	0	1	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	c0010	2274	1	1	0	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	c0011	2274	1	0	0	1	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	c0012	2274	1	0	1	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	c0013	2274	1	0	0	1	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	c0014	2274	1	1	0	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	c0015	2274	1	0	0	1	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	c0016	2274	1	1	0	0	0	0	copy fasta	MFN2	chr1	11975444	12018508
MFN2_chr1_11975444_12018508	0/0	c0017	2274	1	0	0	1	0	0	copy fasta	MFN2	chr1	11975444	12018508