JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MFNG_chr22_37464063_37491384	1/1	c0001	966	283	76	50	108	8	39	copy fasta	MFNG	chr22	37464063	37491384
MFNG_chr22_37464063_37491384	0/0	c0002	966	3	3	0	0	0	0	copy fasta	MFNG	chr22	37464063	37491384
MFNG_chr22_37464063_37491384	0/0	c0003	966	1	1	0	0	0	0	copy fasta	MFNG	chr22	37464063	37491384
MFNG_chr22_37464063_37491384	0/0	c0004	966	1	1	0	0	0	0	copy fasta	MFNG	chr22	37464063	37491384
MFNG_chr22_37464063_37491384	0/0	c0005	966	1	0	0	1	0	0	copy fasta	MFNG	chr22	37464063	37491384
MFNG_chr22_37464063_37491384	0/0	c0006	966	1	0	0	0	0	1	copy fasta	MFNG	chr22	37464063	37491384
MFNG_chr22_37464063_37491384	0/0	c0007	966	1	0	0	1	0	0	copy fasta	MFNG	chr22	37464063	37491384
MFNG_chr22_37464063_37491384	0/0	c0008	966	1	1	0	0	0	0	copy fasta	MFNG	chr22	37464063	37491384
MFRP_chr11_119333942_119351705	0/1	c0001	1740	157	41	36	54	5	20	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0002	1740	48	4	14	16	4	10	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0003	1740	45	12	8	22	0	3	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	1/0	c0004	1740	16	1	6	8	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0005	1740	8	8	0	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0006	1740	7	6	1	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0007	1740	4	0	0	2	1	1	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0008	1740	4	0	0	2	0	2	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0009	1740	3	0	3	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0010	1740	3	3	0	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0011	1740	2	0	0	2	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0012	1740	2	0	1	1	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0013	1740	2	1	0	1	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0014	1740	2	0	2	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0015	1740	2	2	0	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0016	1740	1	1	0	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0017	1740	1	1	0	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0018	1740	1	0	0	0	0	1	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0019	1740	1	0	0	1	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0020	1740	1	0	0	0	0	1	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0021	1740	1	0	0	1	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0022	1740	1	0	0	1	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0023	1740	1	0	0	1	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0024	1740	1	0	0	1	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0025	1740	1	0	1	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0026	1740	1	1	0	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0027	1740	1	1	0	0	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFRP_chr11_119333942_119351705	0/0	c0028	1740	1	0	0	1	0	0	copy fasta	MFRP	chr11	119333942	119351705
MFSD10_chr4_2925567_2939825	1/1	c0001	1368	398	91	69	176	15	45	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	c0002	1368	14	0	12	0	2	0	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	c0003	1368	3	0	0	2	1	0	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	c0004	1368	1	0	0	0	0	1	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	c0005	1368	1	0	1	0	0	0	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	c0006	1368	1	1	0	0	0	0	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	c0007	1368	1	1	0	0	0	0	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	c0008	1368	1	0	0	1	0	0	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	c0009	1368	1	0	0	1	0	0	copy fasta	MFSD10	chr4	2925567	2939825
MFSD10_chr4_2925567_2939825	0/0	c0010	1368	1	1	0	0	0	0	copy fasta	MFSD10	chr4	2925567	2939825
MFSD11_chr17_76733119_76784341	1/1	c0001	1350	330	76	57	153	14	28	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	c0002	1350	5	4	1	0	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	c0003	1350	3	3	0	0	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	c0004	1350	2	2	0	0	0	0	copy fasta	MFSD11	chr17	76733119	76784341