JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MFSD11_chr17_76733119_76784341	0/0	c0005	1350	2	0	0	2	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	c0006	1350	2	0	0	0	0	2	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	c0007	1350	1	1	0	0	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	c0008	1350	1	0	0	0	0	1	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	c0009	1350	1	0	0	0	0	1	copy fasta	MFSD11	chr17	76733119	76784341
MFSD11_chr17_76733119_76784341	0/0	c0010	1350	1	0	0	1	0	0	copy fasta	MFSD11	chr17	76733119	76784341
MFSD12_chr19_3539199_3562586	1/1	c0001	1443	224	15	55	114	13	25	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0002	1443	66	0	11	54	0	1	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0003	1443	56	29	13	2	2	10	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0004	1443	13	6	1	0	0	6	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0005	1443	8	7	1	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0006	1443	7	6	1	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0007	1443	5	5	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0008	1443	5	5	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0009	1443	4	3	1	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0010	1443	4	0	0	4	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0011	1443	4	4	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0012	1443	2	2	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0013	1443	2	2	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0014	1443	2	2	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0015	1443	2	2	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0016	1443	2	0	1	0	0	1	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0017	1443	2	0	1	0	1	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0018	1443	2	1	0	0	0	1	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0019	1443	1	1	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0020	1443	1	1	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0021	1443	1	1	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0022	1443	1	1	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0023	1443	1	1	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0024	1443	1	0	0	1	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0025	1443	1	1	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0026	1443	1	0	0	0	0	1	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0027	1443	1	0	0	1	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0028	1443	1	1	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0029	1443	1	0	1	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0030	1443	1	0	0	0	0	1	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0031	1443	1	0	0	0	0	1	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0032	1443	1	1	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0033	1443	1	1	0	0	0	0	copy fasta	MFSD12	chr19	3539199	3562586
MFSD12_chr19_3539199_3562586	0/0	c0034	1443	1	0	0	0	0	1	copy fasta	MFSD12	chr19	3539199	3562586
MFSD13A_chr10_102456395_102482045	1/0	c0001	1554	158	51	23	67	2	14	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/1	c0002	1554	138	28	36	47	7	19	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	c0003	1554	115	7	13	76	5	14	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	c0004	1554	3	0	0	3	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	c0005	1554	3	3	0	0	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	c0006	1554	1	0	0	1	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	c0007	1554	1	1	0	0	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	c0008	1554	1	0	1	0	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	c0009	1554	1	0	0	1	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	c0010	1554	1	0	1	0	0	0	copy fasta	MFSD13A	chr10	102456395	102482045